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Detailed information on CNT30605041


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378672Gossypium raimondiiArabidopsis thaliana12.8659.1193.33120forward
CNT30501325Gossypium raimondiiCoffea canephora36.7614.8293343forward
CNT30619403Gossypium raimondiiSesamum indicum81.0321.393.52756reverse complement

Expression of CNT30605041

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MILKDGTFSRKTKLRIPRRVEDGATSNPVILLRMES*

>peptide 2 (30 aa)
MSGNPIPFCFFLHKNRPAGKVIYIIYIFFF*

>peptide 3 (39 aa)
QLCTFSIFYLLMIWPGRPNHDIEGWDLFSKNKTPDPEKS*

>peptide 4 (54 aa)
MGPFLEKQNSGSREELKMVQHRILLSYFEWNLSPPHLLSLLHKGISEVKGFSSN*

>peptide 5 (69 aa)
MLWVGNLCSSLLHFRCLPSSSCSSVSQSGSTPAIMVENRGANQDPPNKALFDKANDSFRQLRTRLTPLN*

Sequence

>CNT30605041
ACAGCTATGTACGTTTTCGATTTTCTATTTACTCATGATCTGGCCTGGTCGACCCAATCATGATATTGAAGGATGGGACCTTTTCTCGAAAAACAAAACT
CCGGATCCCGAGAAGAGTTGAAGATGGTGCAACATCGAATCCTGTTATCTTACTTCGAATGGAATCTTAGCCCGCCTCATTTGCTTTCTTTATTGCATAA
GGGCATAAGCGAAGTCAAGGGATTTTCTTCTAACTAGTGGCTGAGAGTAAGCAAGCTACCTTCATTCAACAGCTTTGTGGTTGAGTCAATAACATGCTCT
GGGTCGGGAATCTTTGCTCTTCTCTTTTGCATTTTCGCTGCCTGCCTTCTTCTTCGTGTTCGTCCGTATCGCAAAGCGGGTCGACGCCAGCTATAATGGT
TGAAAATAGGGGGGCCAACCAAGACCCCCCTAATAAAGCTTTGTTTGATAAAGCAAACGATTCGTTCCGACAACTTCGGACCAGATTAACCCCTTTAAAT
TAGCTGATCTTACAAAAAAAATCGGGCGGGCTGGTTGGGAAGGGGTTTTTGGCGGAGAAAAGAATCGCTGAGAGATAGATTCTACTATTTAGTCAGGACA
AATGAGTGGCTGTGCAGCATGCTCCGGAGGAGATTGACCCTTCCCCGAGTCAGTCTAGTCAGAAAGGGGAGGGCCCACTGTCTAGACTGCATTTCGGGAG
TTTGAACACCATCCCATTTCAACCAAAAATACAACCCTGTCAAAGGTATCTAACCTTCCTTCCTTATGAGTGGAAATCCAATCCCGTTTTGTTTTTTTTT
GCATAAAAACCGGCCAGCCGGTAAGGTAATATATATTATATATATATTTTTTTTTTAAACCCGTTCTTCCGACCATTTTTGAAAAGCGCATAGTTTCTAC
TCCAAAATGACCTCCCCAGTCGGGGAACGCATG