Detailed information on CNT30604900


BLAST search results

BLAST vs Swiss-Prot:
sp|P00870|RBS1_SPIOL, E-value = 8e-09

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30394436Oryza punctataTriticum turgidum12.936.0589.2984forward
CNT30591347Oryza punctataMusa acuminata25.9626.0481.66169forward
CNT30555750Oryza punctataOryza glaberrima79.1134.3690.87515forward
CNT30721718Oryza punctataTriticum spelta16.1323.2886.67105forward
CNT30578479Oryza punctataOryza barthii37.4826.8796.31244forward
CNT30115461Oryza punctataOryza nivara71.2768.5490.73464forward

Expression of CNT30604900

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MVLTSELAGLPTRLVSAGLLATRGLVGDEADALHLPNVVETDDANECIWVLNLLQEVLDGERW*

>peptide 2 (70 aa)
MISPVLAFTYACSSTYVDTYTADVYTNKLKKKTEATNWERGNQCKVARFERSKLPKPSRSIESPLYGAHE*

>peptide 3 (37 aa)
MKLMHCTCLTLSKPMMRTNASGYSICFKRSSTVSGGR*

Sequence

>CNT30604900
TAATTCCCAACAAAGCTATGCATGTCCTTCCACACATAATTGAAATGAGACCAGAGGTATCAAGTTTGGTCTGAGTTACATTGGATATAGTATTACATAT
ATGTATCGTTTTTGACGATTTGTACAATATATTTATTACGATGTGTATGTGTATATGATTAGCCCGGTGCTAGCATTCACATATGCATGCTCTTCAACCT
ATGTTGATACATACACAGCTGATGTTTACACAAACAAGCTGAAAAAAAAAACGGAAGCAACAAACTGGGAAAGGGGAAACCAATGCAAGGTGGCCCGATT
CGAACGTTCAAAGCTGCCAAAACCGAGTAGATCAATCGAGTCTCCTCTGTATGGTGCTCACGAGTGAGCTTGCTGGCTTGCCAACTAGGTTAGTTTCCGC
CGGACTCCTCGCAACCCGGGGGCTTGTAGGCGATGAAGCTGATGCACTGCACCTGCCTAACGTTGTCGAAACCGATGATGCGAACGAATGCATCTGGGTA
CTCAATCTGCTTCAAGAGGTCCTCGACGGTGAGCGGTGGTAGGTAAGACAGGGTCTCGAACTTCTTGATGCCTTCAATCGGCCACACCTACGCAGAAATC
ATATGGGTTAAAGTTGATAAGCTCTCTTTCTTGTGTGTCTGATGAGGATAA