Detailed information on CNT30604894


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697485Oryza punctataOryza sativa11.7346.3494.74285forward
CNT30590960Oryza punctataMusa acuminata2.7223.2487.8866forward
CNT30555734Oryza punctataOryza glaberrima28.277.0588.18685forward
CNT30371470Oryza punctataOryza glumipatula19.4381.6686.44472forward
CNT30104541Oryza punctataOryza rufipogon10.9924.7788.76267forward
CNT30578459Oryza punctataOryza barthii14.971.9786.46362forward
CNT30118018Oryza punctataOryza nivara27.1730.4389.39660forward

Expression of CNT30604894

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MSSQESRPTRLLNSVKVVRRWSSSRVVSARLRAARTSTRARAAA*

>peptide 2 (38 aa)
MLDRSDLASLPLIHQRHIYINKSKIVMGPPYLTMCMVN*

>peptide 3 (58 aa)
PHESTDSKFRQMHSCIYCTESKKIGKRKILTRIYLTVYVRNHAHPIPTQSITHSHSNI*

>peptide 4 (41 aa)
MASSRPVTDRASVRATIKKSRSPTTSLAAAIFTACSSAGIT*

>peptide 5 (34 aa)
MLGPTRVTELIQQIEFSFPNSICLVKVTPYIQTR*

>peptide 6 (34 aa)
HTRALTQNSDRCIAAYTVLNRKKLENEKYSHVFT*

>peptide 7 (31 aa)
MKGQKQCVVSIYLLAMHVSLKIDEQTDKKIN*

Sequence

>CNT30604894
TCCACACGAGAGCACTGACTCAAAATTCAGACAGATGCATAGCTGCATATACTGTACTGAATCGAAAAAAATTGGAAAACGAAAAATACTCACACGTATT
TACCTGACAGTTTATGTGCGGAATCACGCACACCCAATCCCAACACAATCGATCACTCACTCACACAGCAATATATAGCTACGTACCATGCAAATAACAA
CACCTCACAAAATTCACCAATAGCGCAGGAGAATTAATCAATGCAATCCACCATATTTCATGGCTCTCCCTGACAGCCACATCTCGATTGATAATTTATT
CCATTGGTAGCAGCGAAGTTTGATCTTCATCGATCTTAGTGTACCCCATTGGTAGCTCCATTGGTGGCGGCACCATTGGTAGCTCCGTTTCCGGCGACGA
CGGCGGCCGCCTTGGCCTTAGCCTTCTCCATCTCCGTCGTCGTCTCCAGCGCCGGTGCCGGCAGTGGCTTGGGAACGGAGGAGGAATTGACGGAGAAGCG
GTCCTCGATGTCGAGCCAGGAGTCGAGGCCAACGAGGTTGTTGAACTCGGTGAAGGTGGTGAGGCGGTGGAGCTCGTCGCGGGTGGTCTCGGCGCGCTTG
AGGGCGGCGAGGACGTCGACGAGGGCGCGGGCGGCGGCGTAGACGGTGGTGGAAGCCCATCTCCATGAGCTCCTGGCGAGTGTGAAGCGGCGTCTTCCCG
CCCTCAAGCATGTTGCACACGCGATAACCCTTCGTCCTCCTGCAGATCTCCATCAGCTCCTCGTCGCTCCGCGGCGCCTCCACGAAGCATGCGTCTGCTC
CGGCCTACATTTTTTTTACATTGTTCATGGATATTCATTCGATATAATGTAGATTAATAACTGATCTCTACCAGTATGATCACCGGTAGAAATGATCTTT
AACTGTTGATACATGAATTCTACTAGTAGTAAAAACAATTTTTTGAACCCTGCTTTGGTAGCAAGCAAAAGTAAAAAAGTTATTCTAGTATAGTAGTTAG
GTGATAGTATAAATAGATAGTATGATTTATTGGTTTAGAAAATGTGAATAGTCCATATTGATTGTTTATGGATCAAATTCCATTATATATAAAAAATATA
CTATCAATATTGTTTGTGTGCCTAATACCATAAGGTAACATTTTCATTGTTTCCGTTGATAAGTGTGCAAGCGGCTTTCAAGATGCAACTTTGACCATAA
CCTTTCGTAAATATTTGTAACGAGAACACTGATTTCAAACATTGATTCTGTTGGTAGACTTCTCGAGATTTATAATTAGTTGAGAATCGAGATCGATTAA
ATTTAAACAAGTTTGAGATCTAGAACATGATTTATCTCTCAAAAAAAGAAGTGGTCAGCTTACATCAATGTAGAGATTGGCACGCCTAATGGCGTCATCA
AGACCAGTGACAGATCGAGCGTCAGTCCGGGCCACGATAAAGAAGTCCCGATCACCAACAACCTCTCTCGCTGCAGCTATCTTCACAGCGTGCTCCTCTG
CTGGTATCACCTAATTTTAATCAACACAAAGAAGAGATCAAGGTAATTAATGCGAGTCACAATTTTGTAATCCTTGATGATGGTGACAAGATGCAGAACA
TGGTGCACTCGATCTTAATTACTATTACCGCTCTAGCTAGAGGCAACATAATGGTGGATAACATTATTAATTGACTGTTGGTGGTTTGTTTTTGTTGAAT
ATATAGAGAAATGTTGGATCGATCGGATCTAGCTAGCTTGCCATTAATACATCAGAGACATATTTATATAAACAAAAGCAAAATTGTAATGGGTCCTCCA
TATTTAACCATGTGCATGGTAAATTAATGTTGGGGCCTACTCGTGTCACTGAATTAATTCAGCAGATCGAGTTTTCATTTCCAAATTCAATATGTTTAGT
GAAAGTGACACCATATATTCAAACTAGATAATAAATATATATATGAAATCTCCTCAATGTGAAATGGAGGGTAAATATATATAGCTAGGACGGATTTTCT
GGTCATTTTGAAACTATCCTATTTTTGCATAATAACTTATGATAATTAAGTTGTGATTCACCACATTAGTCCTGTTATTATTTCGATGTCAGGCGGTTAC
CAATTTATTTCCTCATTAGATTTTGGCAGTTGTGCATTAAGTGTACCTGCTTAATTACGCTATAAACTCTTGCATGTATTTGCAATGGTGAACAGAGTGC
TAAACAGAATTATAGTATCACTATACAGTAGTAGTACATGTTTGTCTAGAACATGAAGGGACAAAAACAGTGTGTTGTCAGTATTTACCTGCTTGCCATG
CATGTGTCCTTGAAGATCGATGAACAAACAGACAAAAAAATAAATTAGCAATCGAAAAAAAAAGAGAAGAAAATCCTCAGGAAAACAAAACAATTTCCAT
GATGTGACAGATGAATAGTTCCTTACCAC