Detailed information on CNT30604884


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41373|RBS_SACHY, E-value = 2e-46

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521203Oryza punctataSetaria italica20.5315.1885140forward
CNT30555612Oryza punctataOryza glaberrima38.1224.8887.69260forward
CNT30597219Oryza punctataOryza meridionalis73.4647.7693.21501forward
CNT30371494Oryza punctataOryza glumipatula22.1422.0488.08151forward
CNT30104481Oryza punctataOryza rufipogon67.1656.8293.23458forward
CNT30578611Oryza punctataOryza barthii37.3926.4890.98255forward
CNT30118016Oryza punctataOryza nivara73.4666.0993.01501forward
CNT30551876Oryza punctataOryza brachyantha34.627.4488.98236forward

Expression of CNT30604884

Peptides detected in this lncRNA

>peptide 1 (46 aa)
VDGFRYALGIILHEYVCIAGDLAFTCPVSPSPKDSCTSNLATTAAP*

>peptide 2 (63 aa)
MHLILPPLLTLPKLELLERRFTGRPAVDLSPWKGATEVADEAITEGAIANLLGAIENLSCSVLP

Sequence

>CNT30604884
GTCGACGGATTCAGATATGCTCTAGGCATCATATTACATGAGTACGTGTGTATAGCCGGAGATCTTGCATTCACGTGCCCTGTCTCACCGTCACCGAAAG
ATAGTTGTACTAGTAATCTTGCAACAACAGCAGCTCCTTGAGCACTTGGGTGGCATCGCTGCATCCGAACATGGGTAGCTTCCACATGGTCCAATACCTA
CCATCATAGTATCCGGGTGATCTATGGTTCTCGCGATAGACGAATCCGACCTTGCTGAACTCTAGGCAAGGCACCCACTTAGATCGAAGCAGGTACTCGA
TCTGCTTCAAAAGGTCCTCCACTGTCAGTGGCGGCAAGTACGACAGAGTCTCGAACTTCTTGATGCCTTCAATGGGCCACACCTGATTGAACAAATTGAT
GCAGACAATTGAATCGGGCTAATGTTGAATATATGTGAACAACGAGCACTTTGAAGGAGAAATTGAAACGTATCGTTTCTGATACCTGCATGCATCTGAT
CCTTCCCCCATTGCTGACGTTACCAAAGCTCGAGCTGCTGGAGCGGCGGTTCACTGGGAGGCCGGCCGTGGACTTGAGCCCCTGGAAGGGAGCCACGGAG
GTGGCCGACGAAGCCATCACGGAGGGAGCCATTGCTAACTTGCTAGGAGCTATAGAAAACTTAAGTTGCAGTGTGCTGCCTC