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Detailed information on CNT30604875


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691629Oryza punctataOryza sativa6.9827.1491.89111forward
CNT30576189Oryza punctataOryza barthii24.6420.3383.42392forward
CNT30116646Oryza punctataOryza nivara24.649.484.18392forward

Expression of CNT30604875

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MFRLLFMLFIFQVYLMFTTLFLFQYSEFWF*

>peptide 2 (63 aa)
GKRRDREPLQPWPLPLMRPCCCCCCPCCRRRFYAAAAATAVADHRSHRHPSPPVIPFCFSPSR*

>peptide 3 (53 aa)
EKGEIESLCSPGRYRSCALVAAAVVPVAAAASTPPPPPQPWLITAAIVIRRHR*

>peptide 4 (42 aa)
RKKERSRASAALAATAHAPLLLLLLSLLPPPLLRRRRRHSRG*

Sequence

>CNT30604875
AGGAAAAAGGAGAGATCGAGAGCCTCTGCAGCCCTGGCCGCTACCGCTCATGCGCCCTTGTTGCTGCTGCTGTTGTCCCTGTTGCCGCCGCCGCTTCTAC
GCCGCCGCCGCCGCCACAGCCGTGGCTGATCACCGCAGCCATCGTCATCCGTCGCCACCGGTGATTCCTTTCTGTTTTTCTCCTTCCCGATAGGAGAAGG
TTCAGAGGGCAGAGGAAGCAGGAGGGGAAAAGAAGAAAAAGGGAAAGCGAAGCAAAGTTGGGGATTTTCTGGGATTCCTCAAATTCACCTCAAATTTGAT
TTTCTCCTCTGTAAGGAGGTGTGGAGAGATCTGGTGTGGAGGGGGTTTCGTCGGGTTACTGTCGATGTCGAGGTTAAAGGCAAGTGCATGATGAACTAAG
TGTGTGATTCTTGGATTGTTTGCTCCATCTATTTATTTCATTATATTTCTATGTGATATGTGATTGCATATGTTCAGATTGTTGTTCATGCTATTTATAT
TTCAAGTTTATCTTATGTTCACGACGTTATTCCTATTTCAATATTCCGAATTCTGGTTCTAGTTAAATAACTTAATTTCCGTGCTTTACATGGATGTGCA
ATTTAGTTTCAATTTCTGACATTGATCATGTAACTAATCTTACCAATATCGGCTGTATCGGCTAACCACGTTGAACTCAATATCGGCCGATACAGATTCC
CAGTCGATACAGACTTTGTTTCCGAAAACATCGTATCTCTTCCAAATTTGCTTTGGCATTTATCTCCAAATCCAATCCATATCTTACCAAATTTCATCGT
TAACAGGCCGGTCTCCACCTCCATATCCGCCCACGCCGGGTCGAAGGTGGACGCCGCCGCGAGCCCCGCCGCCACCATCCTGGCAAGCTGCCGGCTTTGC
CGGCCACTCACTCCAGCGGCGGTGAGGCGGAGGGGAGATATGGAGAGGGGCGGTGCTGGTGGCTAGGTTTCCGTCCCCCTGTCGCCCAAGCGAGAGGCGA
CGCGGGGGAGAGGTACTATGTTGCATGATTTCACCTTTGCTGAAAATGTTGCCAAATAGGCATGTGTGATCATTAAGGTTTTCTTTCATGTTTTCTCACT
CTGACCTTTAATTGTCAGACAGTATCTTGTAGCTTGGTCTGTTATACTTTGAATTTATTATGGGGACTAGTAGGGGCAACCATTAGTATCATCGTGGCTG
ACTCAAAAATAGAATTAGGAAATTTTCGTATGAACAAGTTAAGTATGTATTATTAAGAAATAACAAGAATGCACTATATTTTATTTTTGTTCCTGAGTAT
GTGAACAAGTGAGTCTGGAATTTTAAGGTTTAGACTGATGATATAAACCAAAGAACAGAGAAACAGTACATATATTTGCACAACCCTGAGAACATGAAGG
GCAAATTTTGTAAAAGCATGAATGTCCAATTTGTTCATCTCCTTTTGATTTCTTCATGAGTACCAAATTTCTGAATATTGAAGCCAGCACTAAGAGCAGC
AACATAAATATTGTGAACAAGTAATTCAGTTAGCACCTGTATCCATGTTAGATGAGAATAGCTCCACATTTGGTAGCAGTGCCATCGGAAG