Detailed information on CNT30604869


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONVVIT002763, E-value = 7e-41

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30534084Oryza punctataEucalyptus grandis69.7389.2283.52182forward
CNT30375849Oryza punctataArabidopsis thaliana94.6422.0583247forward
CNT30403132Oryza punctataBeta vulgaris47.8938.9487.2125forward
CNT3096726Oryza punctataSolanum tuberosum56.3262.0387.07147forward
CNT30194314Oryza punctataSecale cereale24.1425.9385.7163reverse complement
CNT30137932Oryza punctataLolium perenne96.1799.689.24251forward
CNT30650401Oryza punctataRosa chinensis57.0916.9183.89149forward
CNT30624889Oryza punctataDaucus carota47.8932.8986.4125forward
CNT30721902Oryza punctataTriticum spelta47.8961.5890.4125forward
CNT30361575Oryza punctataSorghum bicolor60.1524.5790.45157forward
CNT3024604Oryza punctataPopulus trichocarpa54.7914.7384.62143forward

Expression of CNT30604869

Peptides detected in this lncRNA

>peptide 1 (50 aa)
GTDLGWSFLTKDQLRIVTGPVNIPFMGREVMLCAILDQNTVMGLGRLTSP*

Sequence

>CNT30604869
GGCACTGACCTCGGCTGGTCATTCCTGACAAAAGACCAGTTAAGGATTGTGACGGGACCAGTCAACATTCCCTTCATGGGGCGAGAGGTCATGCTCTGCG
CCATCTTGGACCAGAACACAGTCATGGGGTTGGGGCGGCTAACATCACCATAGATAATTGGTGGCTTGACACACCGGGACCCATAGGATTGCACCCATCC
GTTGGCAGTGAATGCAAAACCAGAAAGCTGCTCACCGAAATACTCAACCATATCGTTTCTC