Detailed information on CNT30604860


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002047, E-value = 2e-156

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677131Oryza punctataSetaria viridis31.3143.7187.77139forward
CNT30524206Oryza punctataSetaria italica29.0524.7186.82129forward
CNT30163577Oryza punctataPistacia vera24.119.6784.11107forward
CNT30184447Oryza punctataSecale cereale27.4822.2282.79122forward
CNT30234658Oryza punctataBrassica oleracea22.5224.6387100forward
CNT30172189Oryza punctataTrifolium pratense23.4221.5385.58104forward
CNT30597864Oryza punctataFraxinus excelsior24.777.8781.82110reverse complement
CNT3068435Oryza punctataLeersia perrieri39.8664.694.92177forward
CNT30349238Oryza punctataEragrostis tef30.8630.9383.21137reverse complement
CNT30578483Oryza punctataOryza barthii69.37100.6598.05308forward
CNT30333798Oryza punctataCynara cardunculus20.7218.5184.7892forward

Expression of CNT30604860

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MAPQGQTSLGYICFFVHDPTEEQKLRQNKPLELSL*

Sequence

>CNT30604860
TTGAGTGAACAAAAGAGTCTCATGCTCCCATTGCATTACGAATTATTTGCTTATTCACCAGATTACATCACTGTCTAGCCAGACCCCAAAAAAACTGTGC
ATAAATAAGATTCAGACCACCGCCAGCACCACCATAGCGAAAAAGAATGGCACCACAAGGGCAAACCTCCCTTGGATACATATGTTTTTTTGTTCATGAC
CCAACAGAAGAACAGAAACTAAGACAGAATAAACCCCTAGAGCTCAGCTTGTAGTTTCAGGAATATGAAACAAGAACCCACTAAGGGGTTTGCGTGTTGA
CACATGCCTAATCCGCACGAGATTGGCCAGCACGGGATGACAGAATGATGCCGACAATGAGCCCATAGAGAGCAAGCGCTTCGGCGAAAATGAGGATGAG
AATCATACCCACGAATAGCTTTGGTTGCTGTGCGTTCGCCCTGA