Detailed information on CNT30604840


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 6e-37

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673536Oryza punctataSetaria viridis26.9346.3186.1794forward
CNT30139060Oryza punctataLolium perenne33.8131.0588.98118forward
CNT306891Oryza punctataZea mays31.8117.8582.88111forward
CNT3068379Oryza punctataLeersia perrieri66.1937.8190.91231forward
CNT30116492Oryza punctataOryza nivara43.5532.7695.39152forward
CNT30551969Oryza punctataOryza brachyantha20.347.9995.7771forward

Expression of CNT30604840

Peptides detected in this lncRNA

>peptide 1 (60 aa)
LPHFLSFCIRLGLLPKKLYLLEELSTETLSKSSLLGEEGAEEAVSRVLLRSRAEIFSDGV*

Sequence

>CNT30604840
CCCTCCCCCACTTCTTGAGCTTTTGCATCAGATTGGGCCTTTTGCCAAAGAAGCTGTATCTGCTAGAAGAACTGTCTACTGAAACATTGTCGAAGTCTTC
GCTCCTTGGTGAAGAAGGTGCAGAAGAAGCAGTTTCAAGGGTCTTGTTGAGGTCACGAGCAGAAATTTTCTCGGATGGTGTCTGATAGTTGCGGAGCTCA
TATCTCAGACAAGCATTAACCCAACGCAGGTAAACCAACTCTTCTACTTCACTGAATCTGTTCATTTGCAGGCCTTCTACTTGCTTTGTAAGGTCTTCAT
TTGCATGCCTCAGCTTGTTGATCTCTTCTCTTGCATGGGTAACTACATC