Detailed information on CNT30604831


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697684Oryza punctataOryza sativa32.0324.790.43188forward
CNT30555702Oryza punctataOryza glaberrima55.8828.290.55328forward
CNT30597240Oryza punctataOryza meridionalis31.6928.0590.32186forward
CNT30371513Oryza punctataOryza glumipatula55.8830.6890.85328forward
CNT30104336Oryza punctataOryza rufipogon55.8829.3691.16328forward
CNT30578504Oryza punctataOryza barthii55.8829.6691.16328forward
CNT30551892Oryza punctataOryza brachyantha15.6722.7791.392forward

Expression of CNT30604831

Peptides detected in this lncRNA

>peptide 1 (50 aa)
SNTNLKFISPNSILFKPSIYNVQHKTQLRLHHQYYTGITGNISKLPSLMG*

>peptide 2 (37 aa)
MCLQQVRHDRDMSLMSRVHVCMYVCCCASTTTYIQTN*

Sequence

>CNT30604831
CTCAAATACGAATTTGAAATTCATCTCCCCAAATTCCATTTTGTTCAAACCATCGATCTACAATGTTCAACACAAGACACAACTTAGATTACATCACCAG
TATTACACAGGCATTACCGGGAATATATCCAAATTACCCAGCCTGATGGGTTGATGGATATAATGGGTGGATAAAGAGGATGCACATCCACATCCACATC
CAACCTTATTCATAATCATAGATGATGATAATAACAACATAGCTAATCAAGTTATTACACATAATACAGCACAGGTAGAAACAGACAGACGGACGGACAG
ACGACGGTATATATGTCCTAAGATTAATGTGCTTACAACAAGTTAGGCATGATAGAGATATGAGCCTGATGAGTAGGGTACACGTATGTATGTACGTATG
TTGCTGTGCCAGCACCACAACGTACATACAAACAAACTAAAATGATGCAGAGCCTAATAACCGGCTGTCACCCAGCAACGTCAGTTCCTTGGTCGATTGA
TTACAATGCAAATGCGAATGATTCCTAAAGGCGGTACATCACGGACAAGGGAGGATGATTCGTTTGGGAGTTTCTCTCCAGCTTCAG