Detailed information on CNT30604822


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30597205Oryza punctataOryza meridionalis20.8520.7784.96113forward
CNT30578561Oryza punctataOryza barthii37.6410290.69204forward

Expression of CNT30604822

Peptides detected in this lncRNA

>peptide 1 (83 aa)
SFPFLPSLAATCSAPPSAAVPAGDGWIPRAAAPGAVQSASLPPFRVRFERRSHRSPAAAKLTLNIPSKFNVVESIFNSKCGDL*

>peptide 2 (46 aa)
LPSLFSLLSLLHARRLHRRLFLPEMDGSRGRRRPEPFSPLLSLPFV*

>peptide 3 (36 aa)
MKQRQTAQSFLEKNYCIRKMKYLGPMMLLQQCKRKY*

>peptide 4 (63 aa)
FLPFSPFSRCYMLGASIGGCSCRRWMDPAGGGARSRSVRFSPSLSCEVRAAIASIAGGGKAHS*

Sequence

>CNT30604822
CTTCCTTCCCTTTTCTCCCTTCTCTCGCTGCTACATGCTCGGCGCCTCCATCGGCGGCTGTTCCTGCCGGAGATGGATGGATCCCGCGGGCGGCGGCGCC
CGGAGCCGTTCAGTCCGCTTCTCTCCCTCCCTTTCGTGTGAGGTTCGAGCGGCGATCGCATCGATCGCCGGCGGCGGCAAAGCTCACTCTTAACATTCCA
AGCAAATTTAATGTCGTCGAGAGCATATTCAACAGCAAATGTGGTGACCTTTGACAGTATTGATGAAGCAAAGACAGACAGCACAGTCATTTCTTGAGAA
AAACTACTGCATAAGAAAAATGAAATATTTAGGGCCCATGATGCTGTTACAACAATGTAAGAGGAAATATTGATACAGAAGAGCATTTGCGCTGATTGCA
GTGCTTTTTTTTCTTTTGAAAAATGAAGAGTAAAGAAGGATCATTAATTCATTGGTGTTTTAAAGAGTGCTGTTGGTAGTTGAAAAAGGAAATGAACAAT
CCTTATTTTGATCAATTCATTTAGTATTCCCTCCGTTCCGAA