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Detailed information on CNT30604795


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697166Oryza punctataOryza sativa17.4647.3497.83276forward
CNT30379240Oryza punctataManihot esculenta6.3923.3882.18101forward
CNT30295564Oryza punctataTriticum aestivum10.6932.5682.84169forward
CNT30392014Oryza punctataTriticum turgidum10.6932.6382.84169forward
CNT30662954Oryza punctataTriticum dicoccoides10.6935.2882.84169forward
CNT3074932Oryza punctataBrassica juncea7.437.0382.05117forward
CNT30136831Oryza punctataLolium perenne10.4431.9883.64165forward
CNT3068390Oryza punctataLeersia perrieri14.5543.4894.35230forward
CNT30643000Oryza punctataCannabis sativa8.3552.883.33132forward
CNT30151279Oryza punctataBrachypodium distachyon10.7530.887.65170forward
CNT30104149Oryza punctataOryza rufipogon15.525.1588.16245forward
CNT30117928Oryza punctataOryza nivara17.5239.4697.47277forward
CNT30551777Oryza punctataOryza brachyantha15.3123.8290.91242forward

Expression of CNT30604795

Peptides detected in this lncRNA

>peptide 1 (89 aa)
MASELASPRAASLKYCSASCTRLTFSCSFTSMYPYSMSLSIVILGCSNSGRSIDEEEDGRTDGLAWEAVDDLDDVRLGDVVGAEDTLADA

>peptide 2 (37 aa)
MHFPYNILATCGAQAYAPHVAPPLRYRITSVTNLCAF*

>peptide 3 (40 aa)
MFYKFMKQLLEISVDMKYIVTKSQVQTQLHLRETKMTNFR*

>peptide 4 (31 aa)
MFEKMHIRYSRIYNNIHTGKIYCENEVSVGN*

>peptide 5 (36 aa)
MKRRTDVPMDWPGKLSTILTMSASGTLSVRKIPLQTP

Sequence

>CNT30604795
AAATTGGCAAATGATACCCAAATGAAATATACTCATGTATAGTATAGCCCATATCTTTATATTATATTATTATTAACAAAAACTTGTCATGCCCAGCTAT
GGCTTGGGCGCGATCTGATACACAGTACAAAGAGAAAACATAAGAGAGAAATAATTAATAGCAAGCGTCAAGCCGGCCTGCTTAGAAGGTGTAAAGGCAG
CTGCCGTCGTCGCTCCTCGCCGTTGGGTCGAAGTTCTTGGCAACAGGGTCGGTGCAACCTTCCGGCACAGGCAGGTTACCTGCTTGCTGTGCTCCTTGCC
CTGATCCAAATTATATATCCAAGTACTAACTTTAATCAGCAACCTATCGATCGATATAGTACATAACATAGGAGTATAGTATTATATGTTTGAGAAAATG
CATATCAGATATAGTAGAATATATAATAATATACATACAGGGAAAATATACTGCGAAAACGAGGTAAGTGTTGGAAACTAGTGAAAATCATATCTAAATG
TTTTATAAATTCATGAAACAATTACTAGAGATAAGTGTAGATATGAAATACATTGTTACCAAATCTCAAGTCCAAACTCAACTTCATTTGAGAGAAACAA
AAATGACAAATTTCAGGTAAATAGTGTTATGTTACTATTCACCCAAATTTTGTATTTTTTTATTACTTCAAAATAAAGTTGAGTGTGAACTTGAAATTTG
ATGAGAATGTATTTCATATCTACACCTATCTCTAGTAGTATTTTCATGAATTTATAAAACCTTTTGGTATGATTTTGATAAGTTCCCAACACTTGTCTGT
TTTCACGTGATATGTACATGTATGCTGAAGAACTGAATATACAGGAGTTACGAAATGGAATAGTGAAGAGTTAAGGTTAAATCACCTCCTCCTCCTATGC
AGGCCGCCTAGGATGTATCGATGGGATGAGAATAGCTAGAGATCTTTTATTCAGCTGGATGGCGCAGCACCTATAGACAGGGGCGGAGGTAGAATATTGT
CATGCATAGGGGTCAACCATTAATTTAATTTAACAAATTGTAACTAGAAATTTATGCATTTCCCTTATAATATTCTTGCCACGTGTGGAGCTCAAGCCTA
TGCCCCACACGTGGCTCCGCCCCTGCGCTATAGAATAACGTCCGTAACAAATCTTTGTGCGTTTTAATAATAGTTAGCTGGTCATAATTTGGAGGAAGTT
GGGGTTTCTTTTTTCTTTCATATATATTAGTGATAGAGAAGCTAGATATATATGATATGATGATGGTGTAGTGGAGGGGGTGTTCTAACCGTAGAAGGAA
CCAGTCTTCATGGCGTCGGAGTTAGCGTCACCAAGAGCAGCCTCGCTCAAGTACTGTTCAGCCAGCTGCACACGCTTGACGTTCTCCTGCTCCTTCACAA
GCATGTATCCGTACTCCATGAGCTTGTCGATCGTCATCTTGGGCTGCTCGAACTCCGGTCGGTCGATCGATGAAGAGGAGGACGGACGTACCGATGGATT
GGCCTGGGAAGCTGTCGACGATCTTGACGATGTCCGCCTCGGGGACGTTGTCGGTGCGGAAGATACCCTTGCAGACGCCGA