Detailed information on CNT30604793


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7EAG4|DMC1B_ORYSI, E-value = 1e-33

BLAST vs NONCODE:
NONORUT002023, E-value = 4e-59

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3071898Oryza punctataQuercus suber19.2223.8686.5289forward
CNT30224824Oryza punctataHordeum vulgare45.1437.9387.56209forward
CNT3068273Oryza punctataLeersia perrieri97.6259.7986.73452forward
CNT30371297Oryza punctataOryza glumipatula63.7183.5789.83295reverse complement
CNT30105029Oryza punctataOryza longistaminata94.695.0192.69438forward
CNT30104659Oryza punctataOryza rufipogon76.4673.1490.68354forward
CNT30578572Oryza punctataOryza barthii76.4675.6491.24354forward
CNT30582636Oryza punctataEchinochloa crusgalli36.9335.1990.64171forward
CNT30496955Oryza punctataDigitaria exilis33.6934.6789.74156forward
CNT30118011Oryza punctataOryza nivara63.9374.7590.2296forward
CNT30593120Oryza punctataEragrostis curvula29.1647.791.11135forward

Expression of CNT30604793

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MQEFTWRNLNILKTVSIINEHSVFRIHYST*

>peptide 2 (38 aa)
MRLPISSTVTKTFKQSSRSSFVNVPNLYGLCRNLLGET*

>peptide 3 (62 aa)
MNIQSFASIIPPDVTWKTSSPSGRLGASKILQTRCSPLPFLSINRMVAACASTWPPAGFFGSV

Sequence

>CNT30604793
GGGGAAACCAACTTGTTAAGTTGTTAACCTCTTATATTTTCACTTTAAGACAATACTAGCACTTGTTTCAGTACAAATGTTGATCTCATAACTCATGATA
TCCAATGTGAGGTATAACCGTCTGGATAAATGAGGTTGCCTATTTCCTCAACAGTGACAAAAACATTTAAACAGAGTAGCAGGAGTAGTTTTGTCAATGT
ACCTAACCTATATGGCCTATGCAGGAATTTACTTGGAGAAACCTGAACATTTTGAAGACAGTAAGCATCATTAATGAACATTCAGTCTTTCGCATCCATT
ATTCCACCTGATGTTACCTGGAAAACGTCTTCACCCTCAGGCAGGTTAGGGGCATCAAAGATCTTGCAGACACGCTGCTCTCCTTTGCCTTTCCTCAGCA
TCAACCGGATGGTGGCTGCATGCGCCAGCACGTGGCCTCCCGCAGGTTTCTTCGGGTCAGTTA