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Detailed information on CNT3060477


BLAST search results

BLAST vs Swiss-Prot:
sp|P93312|YMF16_ARATH, E-value = 1e-155

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30374334Arabidopsis lyrataArabidopsis thaliana101.622.1898.361520forward
CNT30619235Arabidopsis lyrataSesamum indicum53.2132.2191.08796forward

Expression of CNT3060477

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MSEFVDVAPTKYGKCQTLGTTRGGVRNRNKKKNRLYFVLCSP*

>peptide 2 (42 aa)
MFLNVYRLMVCNFLFDNLSQVFRIYKQGAWPRSLHSSGLPRSS

>peptide 3 (85 aa)
MLHPRSMESAKHWERPGEELGTGTRRRIDCISSFVLHSNWGSKSTKFDNLLKERRNKSMLLKTLQQMSKRPPLIVYKQNTSQKAG*

>peptide 4 (49 aa)
FFPLPGPISSRGSLCSLVLGIPIQEPVTHRLIHADQSHRVDNNCSSVQL*

>peptide 5 (41 aa)
LFPFTRSYLEQRITLLFGARDSHSRTSNSPSDSRGSEPSSR*

Sequence

>CNT3060477
TCTTTTTCCCTTTACCCGGTCCTATCTCGAGCAGAGGATCACTCTGCTCTTTGGTGCTCGGGATTCCCATTCAAGAACCAGTAACTCACCGTCTGATTCA
CGCGGATCAGAGCCATCGAGTCGATAATAACTGTTCTTCGGTGCAGCTCTGACCCTACAGCAAGATCACGCCGCCGTTAACTAGATAGTTTAGGGGACGA
GTTCTCTTAACTCGATCTTATTATTTGATTATTAAGCCCGCTTTTGCGTTGCCGAACTCTTCTTGTATTTGCCATCAGGTGAAGGAAAGAGGAACCCCTT
TGCCATAGACCAATTACCTGAGATTGACTAGCATGAGGACAGATAGGCTAAAGAGAGGTTAACCCTAGTTGATTCTGCACTCCCTAAAGAGAACAATCCA
TTCCTTTAGCATAGCTAACGAATAAGGAAAACTTAACTACGGCGCTCACCGAATGTATCACTCATCCCGCTGGTAAGGAGTCCTCTGTGTGTTATAATCT
TTATTGGAATTCATTGATAGTTACTTTGCCAGGTTCTAGGGGGGGCTACTCTTATTTTTTTTCTCGATCGAGCCGCTCTCCCTCATTCCACTCGTCCAGC
CCTCTTCACGAACTTGTACAATCGATGCCACAAAAATAGCCAACTCTATTATCAAAGAAATAAGGAAACGGGCGACGATTTGGCACCAGATATCCGGAGG
TGTGGAAAGAGCAGCTGTGAGAAGCGGAAAAACCATCAAAAAACGACGATTGTTCGTGAAGGTTTCCAAAGAAAGACCCCTTGGTTCTGGCAAACAGATC
ACAATTACAGGTACCTGGGAGCATACCGATGGAATGAACGAAATACGAACAGTTAACATAATATGGTCATAGATCTTAGGTTGTAACTTGATCATGAGCG
AATTTGTTGATGTTGCACCCACGAAGTATGGAAAGTGCCAAACATTGGGAACGACCCGGGGAGGAGTTAGGAACAGGAACAAGAAGAAGAATCGATTGTA
TTTCGTCCTTTGTTCTCCATAGCAACTGGGGATCAAAAAGCACCAAATTTGATAACTTATTAAAGGAAAGACGAAATAAGAGCATGCTATTGAAGACGTT
GCAACAAATGTCGAAAAGGCCTCCGTTAATTGTGTACAAACAAAATACGAGTCAAAAGGCAGGGTAAGAAAGGGTGACGCTAATGGAGATATTAACTCTT
CCGGGAACCAGTAACACGTAAACCATGTCAAACCAAGACCGATCAATATCCGAACGGAACGGATTCGAACTTCTCCTAGAATCGTTTCCGATGCGAAATT
AAATTCATAGGATATATATAAGTAATTCAAAGCTAAAAGTGAAGAATTTTATAGGGTTCATGTACCCATGTTCCTAAACGTATATCGGCTAATGGTATGC
AATTTCCTATTTGATAATTTATCTCAAGTATTTCGTATCTATAAGCAGGGGGCGTGGCCAAGAAGCCTACACTCCAGCGGACTGCCCCGTTCTTCA