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Detailed information on CNT30604672


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000820, E-value = 1e-40

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694952Oryza punctataOryza sativa16.2421.6386.59276forward
CNT30369953Oryza punctataOryza glumipatula7.6523.9486.92130reverse complement
CNT30576134Oryza punctataOryza barthii5.7123.8991.7597forward

Expression of CNT30604672

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSNPRCAPINYICLRIFDCCLNIDFSHIL*

>peptide 2 (32 aa)
MILSCRRIVPKVNDFDVGNPQSEERMSRPKIR*

>peptide 3 (34 aa)
MTMVIGTNIYYEFVMIGYVPASSKNVDDSYVRIK*

>peptide 4 (54 aa)
MIWLILNLSNSKTKLKPLEPDHFILIADDSAIHSSVARLNHMLAKCVSHLYYVG*

>peptide 5 (29 aa)
MILTLATLKVKKECHAQKFANPNFKQNVY*

Sequence

>CNT30604672
AATCTGTAACTATGATATTATTGACTTTTTTATAATAGCGAGTAAAATATGTCCATAATTAAAATAATGACTCCATTGATAGAATAATAATATAGATGGT
GCACTGTGATGATTTGGTTGATCCTAAACCTATCCAATAGCAAAACCAAACTTAAGCCTTTAGAACCTGACCATTTTATTTTGATAGCAGATGATTCAGC
CATCCATAGCTCAGTAGCTAGACTAAACCATATGCTAGCAAAGTGTGTATCTCATTTATACTATGTTGGTTAGCTCCCAATAGGCCGCCAGGGCAATAGA
AAATTAAGAAACCTTAGCCCCTTAGCATGTTGGAATCCATTAGCAAGCCGACATAGTATGAGCAACCCTAGGTGCGCCCCCATCAATTATATTTGTTTGC
GCATATTTGATTGTTGTTTGAATATTGATTTTTCTCACATATTATAGTATTGGTGTATCGAATAGTCGTGAGGCAACGTGTGCAGCTTCCAGGAGGTGAA
GGTTGATCAAGATTATATCAAGAGTAAGGATTATCCTGAGCAGGTATTGACGACGTAAATTTGACAGTTAACAGCAGTCAACAGCCGGCGCACTTCAAAC
CCGAAGACTGCTGCTGCGACACCCAATTGAAAGATCAAGTCCTCTAATCTTGTGTTAGGAAGAGTTTTTATGATTAATGACAATGGTTATTGGAACTAAC
ATTTACTATGAGTTTGTGATGATAGGTTATGTTCCGGCATCAAGCAAAAATGTTGATGACTCATATGTGAGGATCAAATGATAGGATTGTGGATTGATAA
CTAGAAAGATGATACCTTACATACCGGGAATCAACAAGAGTCAAATGTTGATGATGTGAATGCTTGGTGAGATCCCATCATGAGTTGATGGACATGTTGA
AGAAGATAAATACCATGATTGAAGATTGATGAAAATAAAGATGGTGTGAGAAGCTAGAAGATGGAGTTTATCGGTTGATGAGAACCAAAGAGAAGATATT
GAAGATCCGAGTATGAAGTGGCTACTTATGGTAAGATAGTGAAGCGCAAGTGAAGCTCAGTTACGATGGACCATGCGGTGGTGAAAGGCAAGCAAGGGTC
TTGGCACTGACGAACCAAATCTGGTGGTGAAGGACGAGAGAAGACTTTGTCGTGATGGACCACGTGAGGCCATTTGAAGCTATGGATTATCCGTATCAAT
CATTTGAGAAATGGAAGATGCAATGCCAAAGATAGAGAAGATGTTATTTGTTGATAATCGAGAAGGGCATTGATTAAGGCAAAGGTATAATTGATTTGGG
ACTAACATGATATTGAGTTGTAGGAGAATAGTCCCGAAGGTGAATGATTTTGACGTTGGCAACCCTCAAAGTGAAGAAAGAATGTCACGCCCAAAAATTC
GCTAACCCGAATTTCAAGCAGAATGTGTATTAAATCTCTGTACAGGACCAACCAGAATACATAAACGATAAATTGATACACAAATCCACGTCTTACAAAA
TTAATAAATAGAAAAGTCTTACATACACAGCGGAAAAAAAATAATAAATAATCGAAACTAATATCTTCATTAAAGCGTAGCATTCTCCACAACCACATGC
ATTCTCAACGTCCGGAACAAATCTAATCTTCAAAATATTCATCATCCAAATAATTCTCTGTCTCTAAGGTTCGAAAAAATTAAGTAAGACTGAAGTACCA