CANTATAdb - search

Detailed information on CNT30604657

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30696344	Oryza punctata	Oryza sativa	100.65	21.37	87.74	620	forward
CNT30103670	Oryza punctata	Oryza rufipogon	73.54	40.34	86.75	453	forward
CNT30117669	Oryza punctata	Oryza nivara	34.25	37.35	91.47	211	forward

Expression of CNT30604657

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MASSLHRFQRCSFNPLHHLCGCWISSLHHHLLG*

>peptide 2 (71 aa)
LFLLNLAAFTVRAGLMCLFYWGCCCQDTSNRTRLLFCSAHNLFLLLHSKWLDMNLRLVQQGRWLNTHLRLA*

>peptide 3 (29 aa)
LSSQPCGFYGQSWTDVPLLLGMLLPRHFQ*

Sequence

>CNT30604657
CTCTTTCTTCTCAACCTTGCGGCTTTTACGGTCAGAGCTGGACTGATGTGCCTCTTTTACTGGGGATGCTGCTGCCAAGACACTTCCAATAGAACAAGGC
TGCTCTTCTGCTCGGCACACAATCTGTTCCTGCTGCTTCACAGCAAGTGGCTCGACATGAACCTTCGGCTTGTTCAACAGGGCAGGTGGCTTAACACACA
TCTTCGGCTTGCTTAACAAGACAGGTGGATCAGCACACACCTCCTTTGGCTTGTTTAGCAGGGTAGGTCGCTCTATATTGAGCTGGCCAAGTAGGGGAAT
TCCTGTTTCTTTCCTCAACTGAACTTGAGTACTCTCTCTGTCGAACGCTTTTGACGGAGTGAGATGGCCAGCTCTTTGCATCGCTTTCAAAGGTGTAGCT
TCAACCCCTTGCATCACCTTTGTGGGTGCTGGATTAGCTCTTTGCATCACCACCTTCTCGGATGAACGAGGGTCAACTCTTCGCATCGCAGCAATCAGTG
TTGACTCGGTGCTAACTCTCTGCACCATATTGACTCTTTGCATGGACTTTGCATCATGCTGCTGACTGACTTTTCTTGATTCACCCAGACAATTGCCATT
CCTTATAGACATGTTC