Detailed information on CNT30604653


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004130, E-value = 7e-131

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690002Oryza punctataOryza sativa16.7532.1892.82195forward
CNT30555721Oryza punctataOryza glaberrima49.8356.5386.55580forward
CNT30597211Oryza punctataOryza meridionalis13.8331.6394.41161forward
CNT30108241Oryza punctataOryza longistaminata49.7479.9786.36579forward

Expression of CNT30604653

Peptides detected in this lncRNA

>peptide 1 (35 aa)
YACIYGITISFITLIDRRPACMLYIASCPRSSQAN*

>peptide 2 (70 aa)
MCALFSFHWKVIKYPKLLTFPLFFLQHVLSSLPPQIKSTNSLSSHHHQIFPQLVENDRSFDLRGWLQQHS*

>peptide 3 (89 aa)
MNHITAHDVFCKCYYVPFALDTTTAEGYICVLLCLLREPRYNLLSVHQFSTLDVLSLWVCEFFFFCFSVGNSACTPNFIVEINFVILTL*

>peptide 4 (32 aa)
MYSPSGCVNFFSFVFRWATLHVLPILLLRLTL*

>peptide 5 (29 aa)
MMSSVSAITYHLHWIQLLQKAIFVFYYVF*

>peptide 6 (34 aa)
ICMYIWNYNFIHHTDRSTTCMHAIYSFLSSLISS*

>peptide 7 (33 aa)
MSSGRSSSTPICAACCYRAALYLVKIVKAKKSR*

Sequence

>CNT30604653
TATATGCATGTATATATGGAATTACAATTTCATTCATCACACTGATCGATCGACGACCTGCATGCATGCTATATATAGCTTCTTGTCCTCGCTCATCTCA
AGCTAATTAAGCTACCTACAGATAGATATAGCCAACTCGTTATCACTGCTGTGATTGTTTGTTTGTTAGGTCAGGGACACACAGAGTCACTACTAGAATT
TCACGGGTCCCTAGGGTTTTAAAATGTTCCCTAAAGCTAAAACTAGAACCCAAGAGGATAATAGGTTTCCTAGAGCCGAAACTAGAACCCAACAAAATTG
AGATGATCCCTAGAGTTTTTTTCTTACTTATAGGGAAACTAGTCCAGTTGACACTGGTAGGAGAACCACGGTGGTAAGGTCCACTGACTTTTTCAGAAAC
CAACCACGTGGAAAGGATGTAATAGTTTCTCCCGCCTTGTAAATCCAAAATTTAGGATGTGTGCTCTATTCTCTTTCCATTGGAAAGTAATAAAATACCC
CAAGCTGCTAACTTTCCCTCTGTTCTTCCTTCAACATGTTCTTTCATCTCTTCCTCCCCAAATCAAGTCAACCAACTCCCTCTCCAGTCACCACCACCAA
ATCTTCCCTCAATTAGTAGAGAACGACAGGAGCTTCGATCTTCGAGGGTGGTTGCAGCAGCACTCCTGACCTGAAGGCCGTGGTGGGTGTGGGCAGTGGG
CTGGTTGCATCTGTTTACGGCTGAGAGGCGACACCGGGACAGGGAGTGAATCAAGGCCACGGCGCCAGCAATGTCAAGTGGTCGAAGCAGTAGTACACCG
ATCTGTGCAGCCTGTTGTTATCGAGCTGCTCTCTACTTAGTAAAGATCGTTAAGGCCAAGAAGTCAAGATAACCACACTCGCAAAACTTGATAAATGAAT
CATATTACTGCGCATGATGTCTTCTGTAAGTGCTATTACGTACCATTTGCATTGGATACAACTACTGCAGAAGGCTATATTTGTGTTTTACTATGTCTTT
TGAGAGAGCCAAGGTATAATCTATTAAGTGTTCATCAATTTTCAACTCTGGATGTACTCTCCCTCTGGGTGTGTGAATTTTTTTTCTTTTGTTTTTCGGT
GGGCAACTCTGCATGTACTCCCAATTTTATTGTTGAGATTAACTTTGTAATATTAACTTTGTAA