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Detailed information on CNT30604606


BLAST search results

BLAST vs Swiss-Prot:
sp|P12330|CB21_ORYSJ, E-value = 2e-99

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696223Oryza punctataOryza sativa63.3758.8490.68526forward
CNT30554896Oryza punctataOryza glaberrima56.9949.5391.33473forward
CNT30103478Oryza punctataOryza rufipogon63.3754.1290.68526forward
CNT30117552Oryza punctataOryza nivara63.3755.1990.49526forward

Expression of CNT30604606

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MVMRASPKSAEVDAARAITGEESAMVAIASRCCTELD*

Sequence

>CNT30604606
CTACTATATTCAATGAATAATCGTGTTGTTTGGTGTTGATCGTTAAAAAAAAAAAGAATAACAGACAGATAACCAAGACCAATTGTTGGGAACGAATAAA
ATCATTATTGCAAAAGCATCATCTTCTTCTTAGTGTACAACACCAACTCGATCATCATCTCGATCTCCCAGCCCAAAGACAACGAACTCGCTGGCCCAAA
TCCATATCCAACCACAACCACAACACTGCTGCTACCTAGCTACGCTCCCTCACTTGCCGGGCACGAAGTTGGTGGCGTACGCCCACGCGTTGTTGTTCAC
CGGGATGCTCTGCGCGTGGATCAAGCTCGGGTTGCCGAGGTAATCGAGGCCACCTTCGCTGAAGATCTGTGACCCGGCCTTGAACCACACGGCCTCGCCG
AACTTGACGCCGTTCCGGGCGAGGAGCTCCGGGAAGACGCAGCCGAGCGCGCCGAGCATTGCCCAACGGCAGTGGATCACCTCCAGCTCGCGGTTCTTGG
CGAACGTCTCGGGATCGGCGGAGAGCCCCGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGCTCGGTGGCTCGCCGGAGAGCGGGCC
GAGGTAGAGGACGCGGTCGGGGCCGTACCACGGGCTGCCGGACACCGCCGGCTTCGGCTTCGCGGCGGACTTGCGCATGGTGATGCGCGCCTCGCCGAAG
AGCGCGGAGGTGGACGCCGCGCGGGCCATCACCGGGGAGGAGAGCGCCATGGTGGCCATTGCTAGCCGCTGCTGCACTGAGCTTGATTGAGCTGAGAGAG
ACGGCCGAGTTCGCGTTGGTGATTGTGGTG