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Detailed information on CNT30604605

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30697843	Oryza punctata	Oryza sativa	36.36	2.68	91.67	84	forward
CNT30673704	Oryza punctata	Setaria viridis	93.51	36.8	93.98	216	reverse complement
CNT30524653	Oryza punctata	Setaria italica	37.23	7.18	91.86	86	reverse complement
CNT30548882	Oryza punctata	Ipomoea triloba	37.23	3.26	91.86	86	reverse complement
CNT30525798	Oryza punctata	Phaseolus vulgaris	78.35	23.45	92.82	181	forward
CNT30632593	Oryza punctata	Vigna unguiculata	37.23	5.09	91.86	86	reverse complement
CNT30504983	Oryza punctata	Nicotiana attenuata	37.23	4.72	91.86	86	reverse complement
CNT30177674	Oryza punctata	Secale cereale	93.51	10.64	94.44	216	forward
CNT30308381	Oryza punctata	Triticum aestivum	93.51	75.26	94.91	216	reverse complement
CNT30221081	Oryza punctata	Hordeum vulgare	93.51	10.67	94.44	216	reverse complement
CNT30384202	Oryza punctata	Triticum turgidum	93.51	13.04	94.44	216	forward
CNT30585815	Oryza punctata	Musa acuminata	37.23	3.54	89.53	86	reverse complement
CNT30538116	Oryza punctata	Brassica napus	78.79	15.02	94.51	182	reverse complement
CNT30234810	Oryza punctata	Brassica oleracea	36.8	11.23	89.41	85	forward
CNT30553653	Oryza punctata	Oryza glaberrima	43.72	5.19	97.03	101	reverse complement
CNT30147394	Oryza punctata	Medicago truncatula	37.23	4.32	91.86	86	reverse complement
CNT30247816	Oryza punctata	Avena sativa	42.42	4.69	90.82	98	reverse complement
CNT30658346	Oryza punctata	Triticum dicoccoides	37.23	18.94	91.86	86	reverse complement
CNT30143344	Oryza punctata	Lolium perenne	37.23	3.84	91.86	86	forward
CNT3017925	Oryza punctata	Zea mays	93.51	18.93	95.37	216	reverse complement
CNT30229838	Oryza punctata	Ananas comosus	34.63	18.06	90	80	forward
CNT30218527	Oryza punctata	Kalanchoe fedtschenkoi	37.23	5.78	91.86	86	forward
CNT3067405	Oryza punctata	Leersia perrieri	93.51	52.17	91.67	216	reverse complement
CNT30647597	Oryza punctata	Rosa chinensis	92.64	41.96	91.12	214	reverse complement
CNT30203328	Oryza punctata	Helianthus annuus	92.64	26	93.46	214	reverse complement
CNT30721611	Oryza punctata	Triticum spelta	37.23	18.66	91.86	86	forward
CNT30371505	Oryza punctata	Oryza glumipatula	72.73	68.02	98.21	168	reverse complement
CNT30154718	Oryza punctata	Prunus persica	37.23	12.41	91.86	86	reverse complement
CNT30409295	Oryza punctata	Papaver somniferum	87.01	35.58	93.53	201	reverse complement
CNT30102660	Oryza punctata	Oryza rufipogon	77.06	47.59	93.26	178	reverse complement
CNT30576588	Oryza punctata	Oryza barthii	43.72	23.01	97.03	101	forward
CNT30582488	Oryza punctata	Echinochloa crusgalli	37.23	7.08	91.86	86	reverse complement
CNT30116696	Oryza punctata	Oryza nivara	37.23	2.17	91.86	86	forward
CNT30333260	Oryza punctata	Cynara cardunculus	26.41	8.36	90.16	61	reverse complement

Expression of CNT30604605

Peptides detected in this lncRNA

>peptide 1 (48 aa)
FLLQEKKLTIRGPSTSTRHCSVRLSPIAENSPLLPPVGVWAVSQSQCG*

>peptide 2 (54 aa)
VSSPRKEVDNPWAFHLHAALLRQAFAHCGKFPTAASRRSLGRVSVPVWLIILSD*

Sequence

>CNT30604605
AGTTTCTTCTCCAAGAAAAGAAGTTGACAATCCGTGGGCCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACT
GCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACTAGCTACAGATCATCGTCTTGGTAATCTATTGCTTCA
CCAAGTAGCTAATCAGATGCACTACGGGGTA