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Detailed information on CNT30604588


BLAST search results

BLAST vs Swiss-Prot:
sp|P12333|CB2A_SPIOL, E-value = 4e-61

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696173Oryza punctataOryza sativa48.8243.1292.02351forward
CNT30554920Oryza punctataOryza glaberrima48.9647.7692.05352forward

Expression of CNT30604588

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MVMRASPKSAEVDAARAITGEESAMVAIASRCCTELD*

Sequence

>CNT30604588
CTACTATATTCAATGAATAATCGTGTTGTTTGGTGTTGATCGTTAAAAAAAAAAAGAATAACAGACAGATAACCAAGACCAATTGTTGGGAACGAATAAA
ATCATTATTGCAAAAGCATCATCTTCTTCTTAGTGTACAACACCAACTCGATCATCATCTCGATCTCCCAGCCCAAAGACAACGAACTCGCTGGCCCAAA
TCCATATCCAACCACAACCACAACACTGCTGCTACCTAGCTACGCTCCCTCACTTGCCGGGCACGAAGTTGGTGGCGTACGCCCACGCGTTGTTGTTCAC
CGGGTCGGCGAGGAGCTCCGGGAAGACGCAGCCGAGCGCGCCGAGCATTGCCCAACGGCAGTGGATCACCTCCAGCTCGCGGTTCTTGGCGAACGTCTCG
GGATCGGCGGAGAGCCCCGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGCTCGGTGGCTCGCCGGAGAGCGGGCCGAGGTAGAGGA
CGCGGTCGGGGCCGTACCACGGGCTGCCGGACACCGCCGGCTTCGGCTTCGCGGCGGACTTGCGCATGGTGATGCGCGCCTCGCCGAAGAGCGCGGAGGT
GGACGCCGCGCGGGCCATCACCGGGGAGGAGAGCGCCATGGTGGCCATTGCTAGCCGCTGCTGCACTGAGCTTGATTGAGCTGAGAGAGACGGCCGAGTT
CGCGTTGGTGATTGTGGTG