« Back to Oryza punctata search


Detailed information on CNT30604563


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555017Oryza punctataOryza glaberrima41.8610.6693.39257forward
CNT30107558Oryza punctataOryza longistaminata57.1733.9593.45351forward
CNT30103475Oryza punctataOryza rufipogon56.6828.292.53348forward

Expression of CNT30604563

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MATTIDHRDHPDTLKAGATGKPTIDAYKSFIYKGRGSQLIHLHSTC*

Sequence

>CNT30604563
GATGGAGGTGGCGGTTGTGGTGATGGCAGTTTGGAGTACTTTGGATGGCACCTCAAATTTGTCGTATGAGTAGTGCTTGATTGTCTCATTTGTAGATATG
TTCAGCAATCCTGAGCTATCTTTCCATGGCCACCACAATCGATCATAGGGATCATCCGGATACCTTGAAAGCTGGAGCCACTGGAAAGCCCACAATCGAT
GCTTATAAATCCTTCATCTACAAGGGGAGAGGGAGTCAGCTGATCCATTTGCACTCCACATGTTAATTAGCAGGAAATTCATTGCAGAACTTACTCTAAA
GGAGATGGTTCCCAAAAAATGTAATGGGCTCATGGCTTTGTACTGAAGTCTCAAATTTAAAGGAGGACAATTAAAAAGTATTTCCAGGAAAGTATATTAG
GAACCACGACACAATACACTGCTGCTGATATGATGTCTCAGCAGTATCACAGAGGTATGATGCCTCGAAGTATTATGATACCTTGAGGGTATCATGAAGA
TGGCACCGATGTTATTTCTTGGTGGTATTACTAAAGTTTTGTGGTGATTTGGTAGTTGTGTCAGAGGTTTCGTGAAGGTATCATGCTTGGGTATCGTCAA
TGTTTTGTGAAGGG