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Detailed information on CNT30604560


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6END5|RR3_ORYNI, E-value = 3e-165

BLAST vs NONCODE:
NONORUT000960, E-value = 4e-132

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694723Oryza punctataOryza sativa99.922.299.41006forward
CNT30641762Oryza punctataNymphaea colorata27.317.9282.55275forward
CNT30503443Oryza punctataNicotiana attenuata23.2469.2382.48234forward
CNT3047594Oryza punctataPrunus dulcis27.3139.1782.18275forward
CNT30185636Oryza punctataSecale cereale69.4145.193.71699forward
CNT30293259Oryza punctataTriticum aestivum80.1457.3693.31807forward
CNT30224357Oryza punctataHordeum vulgare58.1938.8193.52586forward
CNT3086712Oryza punctataVigna radiata22.0574.582.43222forward
CNT30257804Oryza punctataAvena sativa55.8185.2892.53562forward
CNT30311863Oryza punctataCamelina sativa28.617.6482.64288forward
CNT3083474Oryza punctataBrassica juncea28.68.6383.33288forward
CNT30447572Oryza punctataSaccharum spontaneum42.524.8793.22428forward
CNT30134355Oryza punctataLolium perenne44.6917.8790.44450forward
CNT3018340Oryza punctataZea mays29.8922.694.35301forward
CNT30229832Oryza punctataAnanas comosus40.0234.2782.88403forward
CNT30655378Oryza punctataRosa chinensis25.6217.3782.17258forward
CNT30689031Oryza punctataTriticum urartu97.9117.6893.91986forward
CNT30358685Oryza punctataLactuca sativa10.7227.8491.67108forward
CNT30557814Oryza punctataPanicum hallii56.4154.9391.37568forward

Expression of CNT30604560

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MHSARAISFPARRPAIFTFTPFISVFLVNSMAFFIAFRNETLFFNWKAIYSARMLGCL*

>peptide 2 (37 aa)
MVFFMGELRPRARGLNLFIIVLLLTSALVMNKFALSKF

>peptide 3 (33 aa)
DFRENKALVIFYSITEQNGKTGLVILRLRISKF*

>peptide 4 (35 aa)
MVILGCTNLKPSGFIFCPIFFYSIFFYRESNLRWI*

>peptide 5 (36 aa)
GILGKIRLLSFFILLLNRMGRQGWLFFVYEYPNFNS*

>peptide 6 (34 aa)
MDLKIISISLLYLVQLLYDTWFFLWENYVLEPEV*

>peptide 7 (33 aa)
MTHGFFYGRTTSSSPRSEFIHNSTPTDFGFSDE*

Sequence

>CNT30604560
GGGATTTTAGGGAAAATAAGGCTCTTGTCATTTTTTATTCTATTACTGAACAGAATGGGAAGACAGGGTTGGTTATTCTTCGTCTACGAATATCCAAATT
TTAACTCCTAATACTCCATAGATAGTTCGAATTGGATAGCAGCAATAATCAATTTTAGCGCGAATTGTTTGGAGGGGAAGTCTACCTTTTTTGATGCATT
CGGCACGCGCAATTTCTTTTCCCGCGAGACGGCCTGCAATTTTTACTTTTACTCCCTTTATATCCGTTTTTTTAGTTAATTCAATGGCTTTTTTCATTGC
CTTTCGGAATGAAACTCTATTTTTTAATTGGAAAGCTATATATTCTGCAAGAATGTTAGGTTGTCTATAAGGTTCTTTCACTTTTTCGATCCCAATATTA
AGTCTCTGGTTTACAGAATTAACTTCTTTTTGTAGATCTTTCTCTAATTCTTCGATTGCTCCTTTTTTCTTTAATAAATTGGGGAATCCAATATGGATTA
TGACGTGGATTGTATCGATTTCTTTTTGAATTTCTATATGTGTAATTACTTCGGAACTTGAGCCTGAGTCCATTTTTTTATTATGTGTAATTACTTCGAA
ACTTGAGTCTGCTTCTATTTTTCTATTCGAGCCCTTTTTCCTATTCTTTTGTATATAGTTCTTGATACAATTCCGTATTTTTTTATCTTCCTGTAGACCT
TCAGAATAATTTTTTGGTTGTGCGAACCAAAAGGAATGGTGATTTTGGGTTGTACCAATCTGAAACCAAGTGGATTTATTTTTTGTCCCATATTTTTCTA
TTCTATTTTTTTTTACCGGGAATCAAATCTTAGATGGATCTAAAGATTATTTCGATTTCTTTACTATATTTAGTACAATTGTTATATGACACATGGTTTT
TTTTATGGGAGAACTACGTCCTCGAGCCCGAGGTCTGAATTTATTCATAATAGTACTCCTACTGACTTCGGCTTTAGTGATGAATAAATTTGCTTTGTCG
AAATTCC