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Detailed information on CNT30604550


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6END7|RK14_ORYNI, E-value = 1e-47

BLAST vs NONCODE:
NONOSAT001021, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693928Oryza punctataOryza sativa40.4421.295.03886forward
CNT30405603Oryza punctataBeta vulgaris12.0534.5587.12264forward
CNT3048584Oryza punctataPrunus dulcis8.4957.7686.02186forward
CNT30294378Oryza punctataTriticum aestivum21.8623.4789.98479forward
CNT30540371Oryza punctataBrassica napus11.5942.0585.04254forward
CNT30554052Oryza punctataOryza glaberrima28.2170.9594.17618forward
CNT30442098Oryza punctataAegilops tauschii21.8672.3690.19479forward
CNT30243771Oryza punctataAvena sativa22.0441.8990.27483forward
CNT30656274Oryza punctataTriticum dicoccoides21.2293.3789.68465forward
CNT3060130Oryza punctataArabidopsis lyrata11.7328.0385.21257forward
CNT30598237Oryza punctataFraxinus excelsior6.1221.7982.09134forward
CNT30447455Oryza punctataSaccharum spontaneum21.8666.7189.77479forward
CNT30351320Oryza punctataEragrostis tef11.1410089.75244forward
CNT30364284Oryza punctataSorghum bicolor3.2928.9290.2872reverse complement
CNT30620547Oryza punctataCajanus cajan7.2650.6483.65159forward
CNT30357951Oryza punctataLactuca sativa12.1928.3785.39267forward
CNT30411335Oryza punctataPapaver somniferum11.5929.4387.8254forward
CNT30576477Oryza punctataOryza barthii12.6960.5792.09278forward
CNT30585636Oryza punctataEchinochloa crusgalli38.1114.5591.98835forward
CNT30116873Oryza punctataOryza nivara7.1222.3894.87156forward
CNT30336889Oryza punctataCynara cardunculus12.1931.1684.64267forward
CNT30724130Oryza punctataLupinus angustifolius5.4835.9386.67120forward

Expression of CNT30604550

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MLRIGTNDSNSSTPTNQSTFCTNFTNRSSYFHISVFLS*

>peptide 2 (30 aa)
MFSFFFSFWILKHIRETQSTNFLFDLYLVY*

>peptide 3 (78 aa)
MYPLLEFFIWNLDIFAGTFFYFLESQVLFSKDYPCLCLCFGLEQMTLIRPRLRISRHFVQILRTEALIFIFPYSFLKL*

>peptide 4 (61 aa)
LSYVNQFLYSFCHILLSHKYELEITKRKKRYKDIRFRVKCILYLNFLFGIWTFSRVLFFTF*

Sequence

>CNT30604550
CTTTCCTACGTGAACCAATTTTTGTATAGCTTTTGTCATATTTTATTATCTCATAAATATGAGTTAGAAATAACAAAAAGAAAAAAAAGATACAAAGATA
TCCGTTTCAGGGTAAAATGTATCCTTTACTTGAATTTTTTATTTGGAATTTGGACATTTTCGCGGGTACTTTTTTTTACTTTTTAGAAAGTCAAGTTCTT
TTTTCGAAAGATTACCCCTGTCTTTGTTTATGCTTCGGATTGGAACAAATGACTCTAATTCGTCCACGCCTACGAATCAGTCGACATTTTGTACAAATTT
TACGAACAGAAGCTCTTATTTTCATATTTCCGTATTCCTTTCTTAAACTATGAATTTACTCTTTTGGAAAAAATAAGTCTCTTTGTTTAAATTTTAGAAC
TTTGAATTTATTACCCTAGAAAAAAAAAGAAAAACCTAACCCTTTGAATCTTTGGTATCCTTCAAATCTTCGGTATCCTTCGAGTCTTCGGTACGCTTCG
AATCCTTATGGGGAAGTCTATAAATTATATGCCCCTTGCTTTAATTATAACGACTTAATACTTCAATTTTGACCCTATCCTCCATCAGTATTCGTATAGA
ACTAGACCAGATCTTTCTTTGAAATATAGTCCAGGATGATGGTGTCATTCTCTAGGCGAACGCCGGAACATTCCTTTGGGTAGGGCTTCCATAACTAAAC
CCTCAAAAGTAATTTTTGCTTCTCTCGGGTTTTTTTTTTCTCTCCTATTTTTCTTTTCTGTCATATTTTTTTCTCCTATTTTTCTTTTTTTATTTTCAAA
TAAAAAAAACGTTGTATTTTTGTTTGAAAAATAAGAAGTTCAAGATAGAATTTGGGTACTATAACTATAGGTGGGGCGATTACCGCTATAGGCGGGGCGA
TTACCATATATAACATAAGACTTCTCCCCTATTCTTTTTAGTAGAGCTTCTCGATCTGACATTATACCTCTAGAAGTAGAAATAATAGTAATTCTGTTTC
CACCCAAAACCTTAGGAATTTCTTGATAATTGGCATAAATTCTTAAGCCAGGTCGGCTGATACGCTTTAAAAAGTTCTAGTTCTATATATTCCCTTTCTA
GTCTTTCTCTTTAATTGTTGCAAAATTGAAACCAAGAAATATCTATTACTTTCCTGATGTTTCCAAACACTTTCAATAAAACCCTCTCGTAGAAGTATTT
TAACAATGTTTTTGGTAATATTTGTAGGTACTACCCGAACAGTTCCTTTTTATTATGGCTGCGTTTCTTCTAGAGGTTAGTACATCAGCAATAGTGTGCT
TGCCCATAAGAATCTAATTCTAGCTTCCTCCTAATTTTTCTATAATCAACATGTTCTCTTTTTTCTTTTCGTTTTGGATTCTAAAGCATATACGTGAAAC
ACAATCTACTAATTTTTTATTCGACCTATATCTTGTCTACTAGTATTTATAATACTTCAGGAGCTAATGAAACTATTTTAGTAAAATTCAATTCTCTCAA
TTCCTCGGCGATCGCGCCAAAAACGCGAGTTCCCTTTGGATTTCCTTTTTGATCAATGATAACCGCTGCATTATCGTAATAGCATATTATTATACCGTCT
TCGCATTTGAACTCTTTACATGTACGTACAATTACAGCTCGAATTACTTCGGATCTTTCTAGAGGCATTTGGGGAACTGCATCTTTGATTACAACAACAA
TAACATCACCAGTACGTGTTTCCGTCGGTCTTACTGTAACCGGTTCGTTGGGAAATATACTTACCCAGATTTTTCCACCACGACGTGCATATCGTGTCAT
TGCTCTTCGTCCTGCTTCTATCTGCCTCGCCGTAATCCAAGTGGGTTCAAGTGCTTGAAGAGAATATCTACCAAAACAAATACGATTGCTTCGGTAGGAT
TTTCCCTTCATTCTTCCTCTATGTTGTTTATGAAATCTGGTTCTTTTCGGGTTATACATAGCAATTTTACTAAAAGATTTCTCAATTTTCATTAAATCTT
ATAGAAAGAGGTAGAATTTCTTCTTTTTTTCAGGGATTTTAGGGAAAATAAGGCTCTTGTCATTTTTTATTCTATTACTGAACAGAATGGGAAGACATGG
TTGGTTATTCTTCATCTACGAATATCCAAATTTTAATTCCTAATACTCCATAGATAGTTCGAATTGAATAGCAGTACTAATCAATTTTAGC