Detailed information on CNT30604472


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SZB9|PER47_ARATH, E-value = 8e-122

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673410Oryza punctataSetaria viridis3.3121.7691.4947forward
CNT30256936Oryza punctataAvena sativa12.6950.1488.89180forward
CNT30473406Oryza punctataSaccharum spontaneum14.4620.4881.46205forward
CNT30116812Oryza punctataOryza nivara4.0927.2387.9358forward

Expression of CNT30604472

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MMTASRAARARMSAQETTPGHRDSRASLMRSMTSKPRRLLLASASFSAVLSGVESRRTEASQPWTKQSWK*

>peptide 2 (59 aa)
MHTYLYILSDMYTLCLKKSKYTANFFFWNGGSIIVLQPFIYSTTIVPAASCSISGKLGT*

>peptide 3 (29 aa)
FVTGVQEPCLFLCLEHHSIIVHAYISIYT*

>peptide 4 (44 aa)
MSCTVNPCVANSWISVVAFMNGGGSATVSAAFDRLPSILPVATP*

>peptide 5 (39 aa)
MASMPMYNLSSQRRGRVYSILLSCMHQPINSDELRRAIR*

>peptide 6 (45 aa)
MLSAAAPRGAVTMTTTSTIISSLTSFFAAAAIIFDSLYLACDEEDE

>peptide 7 (80 aa)
MPGSWRTCSPAASSPATRTASGRRSAGPAAAAAHGSRRRRTHCSSGRTSPSPRPRRRRTCCPATTPASRPSSSSPSPPGS*

>peptide 8 (32 aa)
MANMFTSRFVSGDSNSVWSEVSRPRRCCSSRK*

>peptide 9 (36 aa)
CNWSSRTLFISLFGASQYYCTCIHIYIYLVTCTPSV*

Sequence

>CNT30604472
TTTGTAACTGGAGTTCAAGAACCTTGTTTATTTCTTTGTTTGGAGCATCACAGTATTATTGTACATGCATACATATCTATATATACTTAGTGACATGTAC
ACCCTCTGTCTAAAAAAATCCAAATACACAGCTAATTTTTTTTTTTGGAATGGAGGGAGTATAATTGTTTTACAACCTTTCATATACAGTACCACAATTG
TACCAGCTGCTAGCTGTAGCATTTCTGGCAAGCTTGGTACTTAGCACTACTAGTAGTATACATGGCCTCCATGCCAATGTATAATTTAAGTTCACAAAGA
CGCGGTCGAGTATACAGTATATTATTGAGTTGCATGCACCAACCAATAAACTCAGATGAGTTAAGGCGGGCAATTCGCTAGTACTCCAACATATATAGAT
TGTTGGTATGTATAATTAGTTGACGACCCTGCAAGATGCCCTGACCTCGCCGGCGTCGCCCTCTTTGAGATCGAGCTGGCCCATCTTGAGCATCCCTTGC
TGGAACGCATAGAAGAAGTATGCCTGGTTCATGGCGAACATGTTCACCAGCCGCTTCGTCTCCGGCGACTCGAACAGCGTCTGGTCGGAGGTCAGCAGGC
CCCGCCGCTGCTGCAGCTCACGGAAGTAGACGCCGTCGAACACATTGCTCGTCCGGTCGAACGTCGCCGTCGCCGCGTCCCCGCCGGAGGCGCACGTGCT
GCCCAGCGACGACGCCAGCGTCGCGTCCATCGTCGTCGTCTCCGTCGCCACCCGGTTCTTGAAGTTGGCGCAGTGCGCCCTCCCCAGCGTGTGCCCGCCC
GACAGCGCCACCATGTCCTGCACGGTGAACCCGTGCGTCGCGAACAGCTGGATCAGCGTCGTCGCGTTCATGAACGGCGGCGGCAGCGCCACCGTGTCCG
CCGCGTTCGACCGCCTCCCGTCCATCCTCCCCGTCGCCACGCCGTAGTACGGCCCTCCGGCCATGATGACGGCGTCGCGGGCGGCGAGGGCGAGGATGTC
GGCGCAGGAGACGACGCCGGGGCACCGCGACTCGAGGGCATCCTTGATGCGGTCGATGACCTCGAAGCCGCGGAGGCTCTTGTTGGCGAGCGCGTCCTTC
TCGGCGGTGTTGTCCGGGGTGGAGTCGAGGAGGACGGAGGCGTCGCAGCCCTGGACGAAGCAGTCGTGGAAGTGAAGCCGGAGGAGGCTGGCGGCGAGGG
ACGGGTCGCCCATCAGCGCCTGGCTCACCACGCTCCTCACCACCATCTCCGCGAACGGGCAGCTCATCCCATAGTAGTCCATGCTCAGCGCCGCCGCTCC
CCGCGGCGCCGTCACCATGACCACCACCTCCACCATTATCAGCAGCCTCACCAGTTTCTTCGCCGCAGCGGCCATCATCTTCGATTCACTCTATCTAGCT
TGCGATGAAGAAGATGAG