Detailed information on CNT30604461


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001562, E-value = 2e-90

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695742Oryza punctataOryza sativa53.2155.2985.65439reverse complement
CNT30554901Oryza punctataOryza glaberrima5282.8283.92429reverse complement
CNT30596675Oryza punctataOryza meridionalis30.0625.0583.47248reverse complement
CNT30370717Oryza punctataOryza glumipatula51.7688.4183.61427forward

Expression of CNT30604461

Peptides detected in this lncRNA

>peptide 1 (93 aa)
SPEEGKQFGQFGTLFLPIRQEKKTAVFVCSNGVRSGCGQCSQRATAAERTQVQCSKKPRASGEHQGEEATADWVQHPLGFQEDLPNSLREEMM*

>peptide 2 (61 aa)
MVYEAAVASALKGQQQQRGHKCSAARSHEHQVSIKEKKQQQIGCSILWAFRRIYPTASGKK*

>peptide 3 (69 aa)
MATINTTIAPIKIKLPKCWNPSRPSATVLTSNGHQLFIRAPFLTREYLMESSWSPFSNASSLISKFHLN*

>peptide 4 (29 aa)
MGLWTCNFIWDPGPSGTHVGCVPTRWSTT*

Sequence

>CNT30604461
TCACCTGAAGAAGGCAAGCAATTTGGGCAATTTGGCACTCTGTTCTTGCCGATAAGACAAGAAAAAAAAACAGCAGTTTTTGTCTGCAGCAATGGTGTAC
GAAGCGGCTGTGGCCAGTGCTCTCAAAGGGCAACAGCAGCAGAGAGGACACAAGTGCAGTGCAGCAAGAAGCCACGAGCATCAGGTGAGCATCAAGGAGA
AGAAGCAACAGCAGATTGGGTGCAGCATCCTCTGGGCTTTCAGGAGGATCTACCCAACAGCCTCAGGGAAGAAATGATGTAAATACCAGGCTTATGCTAC
ACATATAGCAAACTATATAATGGTGAGCTAATGTGACCATGGCTACCATTAATACAACCATTGCTCCCATCAAGATCAAGTTGCCCAAATGCTGGAATCC
AAGTCGGCCATCTGCTACAGTGTTGACTTCAAACGGTCACCAACTATTCATACGAGCTCCGTTTTTGACTCGTGAGTACTTGATGGAAAGTTCTTGGAGT
CCTTTTTCTAATGCATCTAGCCTCATCTCCAAATTCCATCTCAATTAGCCGTAATTACAGAAACAAGGTGCCGCGTCACCTATAATGGGTCTATGGACTT
GTAACTTCATTTGGGACCCCGGCCCAAGTGGGACCCATGTGGGGTGCGTCCCAACCAGGTGGAGCACGACCTAGGGACCCCTTGGTCATCCTCCCACCCC
TTTAAATAGCTAGGTACCCTTTTAGGGTTTCTCGGGTTTTATTAGATTAAAGTTTAGCTACTTGCTTGCAGCGCGCATGTCGGCTAGACCGCCCGTCTGT
TTGTCTTTAGAACCTCAACTTATCG