CANTATAdb - search

Detailed information on CNT30604441

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30596793	Oryza punctata	Oryza meridionalis	39.35	9.92	85.85	205	forward
CNT30102953	Oryza punctata	Oryza rufipogon	21.69	8.02	92.04	113	forward

Expression of CNT30604441

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MRWLVCQLGSIEFDRSIYIRALLILMWGGVQNRMPPLLIFGYTRRSSIIYMIFRPHTYICPSKNTFFFLQITASMHVTNSFF*

>peptide 2 (54 aa)
MSLSLRLQNILVKKKRGTAAACMCRAVVNLYYSIYMFVNIRTDQVQKESKKERKK

Sequence

>CNT30604441
GAGGACTACATCGATATCGCTAGGAGATGAACACATCTAGGTATCTGATCCGTACGTGTGAAGATGGATAGCGACGATGCGTTGGCTCGTGTGTCAATTA
GGCTCGATCGAGTTTGATCGTTCAATATATATCCGCGCATTATTAATATTAATGTGGGGTGGGGTTCAAAACCGGATGCCGCCGTTGTTGATATTTGGAT
ACACAAGACGGTCGTCGATCATATATATGATCTTCAGGCCACACACATATATTTGTCCTAGCAAAAACACTTTTTTTTTTTTGCAAATTACAGCTAGCAT
GCATGTAACAAATTCGTTTTTTTAATAGAAAAAATCAGTCGCATTTGTTTTCCCCATGTCATTGTCATTAAGATTACAAAACATTTTAGTGAAAAAAAAA
AGAGGAACCGCTGCTGCCTGCATGTGTCGTGCTGTTGTTAATTTGTACTACTCTATATATATGTTTGTTAATATTCGTACAGACCAGGTTCAGAAAGAAT
CAAAGAAAGAAAGAAAGAAAC