Detailed information on CNT30604423


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004359, E-value = 4e-40

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692886Oryza punctataOryza sativa15.4422.9285.65209forward
CNT30596034Oryza punctataOryza meridionalis15.2936.3882.61207forward
CNT30369613Oryza punctataOryza glumipatula18.4623.0282250forward
CNT30108101Oryza punctataOryza longistaminata14.1840.6884.9192forward
CNT30102917Oryza punctataOryza rufipogon13.8126.1987.17187forward
CNT30576100Oryza punctataOryza barthii9.0131.281.15122forward

Expression of CNT30604423

Peptides detected in this lncRNA

>peptide 1 (35 aa)
PAIYSTPAPRTPRERVHYPSFSLVFVAGRRKDRRC*

>peptide 2 (32 aa)
MRPPPPGVQRPCTSFLFWPRHLPRRRSPPTLV*

>peptide 3 (70 aa)
MKPSPLAHLIGGTLTITGDETTTAGCAKTLHIFPLLAASSTSAPFTADAGVKLAGRSRPVSAAASSSPSI*

>peptide 4 (52 aa)
MGTSQAEVDCHAKVLAMSRMFPSRGFGFYIMLTTCFDLLISIGNYKVKSGCSP

>peptide 5 (60 aa)
GHLLHSSTENTERASPLSFFLPRLRRRPPEGSTLLIVVKTSPPLLHLRSMISSRRRFHLF*

>peptide 6 (68 aa)
RPSTPLQHREHRESESTILLSPSSSSPAAGRIDAANRCQDIATSSSSPFHDLLSTPVPSILTSPSIVK*

Sequence

>CNT30604423
CCGGCCATCTACTCCACTCCAGCACCGAGAACACCGAGAGAGCGAGTCCACTATCCTTCTTTCTCCCTCGTCTTCGTCGCCGGCCGCCGGAAGGATCGAC
GCTGCTAATCGTTGTCAAGACATCGCCACCTCTTCTTCATCTCCGTTCCATGATCTCCTCTCGACGCCGGTTCCATCTATTCTAACCTCGCCCTCTATCG
TGAAGTGAGCGCACGGGAACGTGGACCTCGCCGACGACGCTCTGGAGCGCGCACTGGACGCCGCCACCGGGACATCGTCTTCGTCGCCGTCGAACCGGAG
CAAGCCGCTGCGCCATCGTCATCGCCTAGACGTCCTCTCCATTTTCCCTCAAAAGCCCCGAAGATTGGCGTACCGAAGAGAGAGATCGACTCTGTCTTCC
CCGGCGCCGGCCATTGTCGCCGCCATCGATTCTCTTCACACTCGTTGGATAGCTGATTTGGCCCATCGACGTCACCTCGGAGCTTTTTACCGCCGCCGCT
GGGATTCTCCATCACCGTCGCCTCACTGGAGCCCTTCCGCCGCGTAAGCCGTTCGCTATGAAGCCGTCGCCGCTCGCACACCTCATCGGCGGGACTCTGA
CCATCACCGGTGATGAGACCACCACCGCCGGGTGTGCAAAGACCTTGCACATCTTTCCTCTTTTGGCCGCGTCATCTACCTCGGCGCCGTTCACCGCCGA
CGCTGGTGTGAAGCTCGCCGGTCGCTCCCGCCCTGTCTCCGCTGCTGCTTCCTCCTCCCCAAGCATATGACAGATAATTGCAATAATGGCGAATGAGTGA
TCCCGGTGCTAACATTTCCCAGGAACAAGTTGTATCTCTAGTTTAACTTGAGTGAATCGAGAACCGTCTTTGTCTTTAGGACTTGATTCTAATAGGGGTG
TACCCCTAATCGGCTGCTTGTGGATTGGGTAGCTAAGCTTCCGCGAATCTCTGGTTATTTCGTGGGTTTACCTATGTACAACTAAAATGGTTGTAATCTG
AATTTTATTCGTCTTAGTTGTATTTGCTTATGTGTATCATTGCTTAAGATGAAAGTGTAGGACTAGTGCTTATCCTGGGAACTGGTTATACATGAGTATG
AGTTGAGAACATTTGAGATGTACTAGAGCTTTAGCAAAATTTATCAAGTCTCCGGAATGTGTAACACATCTGGTCACCACCTTCCTGTGGTTTGATGGGC
ACATCTCAGGCTGAAGTTGACTGCCATGCTAAAGTCCTAGCAATGTCTCGCATGTTCCCTTCTCGAGGCTTCGGATTTTATATTATGCTTACTACTTGTT
TTGATTTGTTAATCTCAATTGGCAATTATAAAGTAAAGTCCGGGTGTTCTCCAC