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Detailed information on CNT30604377


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695162Oryza punctataOryza sativa67.5395.4194.42520forward
CNT30596622Oryza punctataOryza meridionalis67.7956.4990.42522forward

Expression of CNT30604377

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MFYNKKHTCSDATTLRTYIDSHMDTPVNNTRRTHI*

>peptide 2 (39 aa)
MSGTFAANAMTSAKWKHSERIDLFISLPLQTLLLTLASTQ

>peptide 3 (35 aa)
MQDHMQQTTKSTQFPGTIIAMAGERGGGFGRDGSG*

Sequence

>CNT30604377
ACATGCTCTTTTTATTGATGGTATATATGTACTCACATACATAACACACATGCATATATATGTTTTATAATAAGAAGCACACCTGCTCAGATGCAACGAC
ATTAAGGACATACATAGATAGTCACATGGACACTCCAGTGAACAACACAAGAAGAACACACATATAGTCACTAGAGCAATAGTACAAACCAAAAGTATGC
AGGATCATATGCAGCAAACAACCAAATCTACTCAGTTCCCGGGCACAATTATAGCTATGGCTGGTGAAAGGGGTGGCGGCTTTGGCAGGGATGGCTCTGG
CTGAGGCTTGGGTTCTGGCTTAGGATCAGGCTGCGGCTCCGGCTTAGGATTAGGATTTGGCTTGGGGTTGGGGCTCGGCTCAGGTTTGGGTTCAGGTTTT
GGCTCCGGTTTAGGATTTGGGCTTGGCTCTGGTTGTGGATTAGGCTTTGGATTTGGTTTCGGGTCCACTTTGGGGCCAGGTTGCGGGTTCGGTTGAGGAT
CTTGTTTCGGGTCAGGCTGTGGCGTTGGTTTCGGGTCAGGCTGTGGACTGGGCTTTGTCTCTGGTTGTGGTTTTGATGTTGGGTCAGGTTTAGGCTTGGG
ATCTGCTGGGTTTGGATCAGATTTAGCTTCAATCACGCGTCCATTGGCAATGTCAGGAACATTTGCCGCCAATGCAATGACAAGCGCCAAATGGAAGCAC
AGTGAGAGGATTGATCTCTTCATCTCGTTGCCACTACAAACTCTACTACTCACTCTTGCTAGTACTCAAG