CANTATAdb - search

Detailed information on CNT30604359

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004629, E-value = 1e-25

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3099558	Oryza punctata	Oryza rufipogon	22.09	13.4	89.29	112	forward

Expression of CNT30604359

Peptides detected in this lncRNA

>peptide 1 (35 aa)
ITRLDEDDVHGPTTTIQGHCALATDTPSPMVVANL*

Sequence

>CNT30604359
TGATAACTCGATTGGATGAAGACGACGTTCACGGTCCGACTACAACTATCCAAGGACACTGCGCCTTAGCAACCGATACACCGTCTCCAATGGTTGTCGC
GAACTTGTGATGCGCGACACCCGGCCACGAGGGCACTCGTCCTGCAGGCAATCGAAGAACAAGCAAGAACAAGTAGAACAAGCACTGAATTGCTAGATGA
AGATGAAAGCTTCACTATGAAAGACACAATACGGTGGGGTTCCGATTACAAGCAGACGGACGGTTTAGCCAACACGCGCGCTGCGAGCAGGTAGCAAGTA
GCTAACTCTAATCATCAAAACCCGAGTAAACCCTAAAGGGGTACCTAGCTATTTATGGAGGTGGGAGGACGACCTAGGGAGCCCTAGGGTCGTGCTCCAC
CTGTTTGGGGCGCACCCCACATGGGCCCCTCATGGGCCGGGGTCCCAGATGAAGTTACAAGCCCATAGGCCCATTATAGGTGACGTAGCACCTTGTTTAT
ATAATAG