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Detailed information on CNT30604331


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7F1U0|PER22_ORYSJ, E-value = 1e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694715Oryza punctataOryza sativa33.8223.4690.13233forward
CNT30671850Oryza punctataSetaria viridis29.0344.1589200forward
CNT30178931Oryza punctataSecale cereale39.1942.5287.41270forward
CNT30221499Oryza punctataHordeum vulgare40.4995.8884.23279forward
CNT30386567Oryza punctataTriticum turgidum14.0827.2586.697forward
CNT30554321Oryza punctataOryza glaberrima23.6633.5497.55163forward
CNT30659540Oryza punctataTriticum dicoccoides49.0694.6880.77338forward
CNT30680601Oryza punctataTriticum urartu10.620.9887.6773forward
CNT30348947Oryza punctataEragrostis tef20.931.9386.11144forward
CNT30596630Oryza punctataOryza meridionalis98.2688.1590.4677forward
CNT30370682Oryza punctataOryza glumipatula98.2683.7987.74677forward
CNT30102748Oryza punctataOryza rufipogon45.7241.1891.11315forward
CNT30577207Oryza punctataOryza barthii98.2677.4687.59677forward
CNT30117253Oryza punctataOryza nivara74.1768.4188.26511forward

Expression of CNT30604331

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MFPIFTMAVVKALLNAAALEAKFLTVLSVLPPLKSTWSECRSPLFDSRLLK*

>peptide 2 (56 aa)
RNRSDMREGKQFIDPPCLRMRNVYFGTYLGANAMAALLHTLDGLLERAGCCILYVY*

Sequence

>CNT30604331
GGAGAAACAGGAGTGACATGCGGGAAGGTAAACAGTTCATTGATCCTCCATGCCTTCGCATGAGAAACGTTTATTTTGGTACGTACTTAGGTGCTAATGC
CATGGCTGCTCTGCTCCATACACTTGATGGGTTGCTAGAGCGAGCTGGCTGCTGTATACTTTACGTGTACTAGTACAGCACCACCGCATCTATACTTGTG
GTATACTACACACGGGTATATGTAGTGTGGCCGCCGGACACATGAATCCGTTTATGTCGTCGTCGACACGATTTGCTTCCGGCAACGCATCCCGTCTTGC
TACTTAGGAGTTCACCCTGGAGCAGCTGAGCCTGATCTGCCCCTGTGTCCCAGTCAACGGCGAGATGTTCCCCATCTTCACCATGGCCGTCGTGAAGGCG
CTGCTGAACGCCGCCGCGTTGGAGGCGAAGTTCCTCACCGTGTTGTCCGTGCTGCCGCCGTTGAAGAGCACCTGGTCGGAGTGCAGGAGCCCCTTGTTCG
ACAGCAGGTTGCTGAAGTAGGCGTTGTCGAACGAGTAGGGCGTCGTCGTGTCCAGCGCCGCCAGGTTGCTGTCGCCGGTGCCGGCCGTCCGCGGGCAGTT
GGCCCTGAGCGACGCCGCGTAGCCGGCGTCGATGTTGGTCTCGTTGTAGATCCTGTCCCTGAAGTTGGTGCACTGCGCCTGTCCGATCG