Detailed information on CNT30604314


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378682Oryza punctataArabidopsis thaliana27.044.598.6373forward
CNT30291343Oryza punctataTriticum aestivum40.377.2599.08109forward
CNT30225628Oryza punctataHordeum vulgare40.3754.2399.08109forward
CNT3018020Oryza punctataZea mays40.372.6598.17109forward
CNT30655367Oryza punctataRosa chinensis26.314.8510071forward
CNT30680889Oryza punctataTriticum urartu40.3715.1699.08109reverse complement
CNT30340273Oryza punctataEragrostis tef38.1511.3998.06103reverse complement
CNT30597053Oryza punctataOryza meridionalis24.071.8598.4665forward
CNT30371327Oryza punctataOryza glumipatula24.071.6596.9265forward
CNT3057667Oryza punctataAmborella trichopoda21.483.2798.2858forward
CNT30575833Oryza punctataOryza barthii45.5618.3699.19123forward

Expression of CNT30604314

Peptides detected in this lncRNA

>peptide 1 (32 aa)
SIPTTRSIFLLYDICIIHLYMHLFFFPKRVLV*

>peptide 2 (43 aa)
VRFPLPAPYSFFMIYASYICICICFSFLKEFWSNSFFSWSDKK*

Sequence

>CNT30604314
GTTCGATTCCCACTACCCGCTCCATATTCCTTCTTTATGATATATGCATCATACATTTGTATATGCATTTGTTTTTCTTTCCTAAAAGAGTTTTGGTCTA
ACAGTTTTTTCTCTTGGTCCGATAAAAAATGAAAAGAAAGAAGAAAATATGAAAAAAGCGTCCATTGTCTAATGGATAGGACAGAGGTCTTCTAAACCTT
TGGTATAGGTTCAAATCCTATTGGACGCAATCTTATTTCTATCTATTCTTTAAATAACTATATTAAAGAC