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Detailed information on CNT30604305


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 2e-151

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-103

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30306465Oryza punctataTriticum aestivum76.0275.7788.23688forward
CNT30476368Oryza punctataSaccharum spontaneum75.6940.9487.45685forward
CNT3067471Oryza punctataLeersia perrieri76.0268.2590.84688forward
CNT30147950Oryza punctataBrachypodium distachyon73.4870.4487.37665forward

Expression of CNT30604305

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MVFPVKVFTKICMPPLRRRTRWRVDSFWML*

Sequence

>CNT30604305
TATCCAGAATAAGCGGGATTGATTTTTCTGAAAATAACAAGTATCAAGAACAAGCAGGATGCAACTTCAGTTATTCTTAACGTATATCGGGACACGACGA
TAACTGAAACACAGATATGGAAACTTGAAACTAACACCATCTTAAACTTTTCATTTGCGCAAATCCACCGCCCACCAGGCGTAGCAAAACATCTGAACCA
ACCGGCACAGAACCTACTGGCCACCACGGAGGCGGAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGGGTACGGCCATCCTCAAG
CTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGAATCTTCGCCTTCACATTGTCGATCGTATCAGAAGACTCAACC
TCAAGCGTAATGGTCTTGCCGGTCAGGGTCTTGACAAAGATTTGCATCCCACCCCTAAGTCTGAGCACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGT
AATCAGCCAGGGTCCTACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGAGGGATTCCCTCCTTGTCCTGGATCTTCGCCTTCAC
ATTGTCGATCGTGTCCGAGGACTCGACCTCAAGAGTGATGGTCTTTCCTGTCAAGGTCTTCACAAAGATCTGCATGCCTCCCCTGAGGCGAAGGACAAGG
TGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGCGAGGGTGCGACCATCCTCTAGTTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCAGGTGGAATGC
CCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATTGTATCAGACGACTCAACCTCGAGGGTGATGGTCTTGCCGGTAAGTGTCTTCACAAAGATCTG
CATCT