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Detailed information on CNT30604212


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000956, E-value = 2e-124

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694317Oryza punctataOryza sativa9.0524.3988.8990forward
CNT30554226Oryza punctataOryza glaberrima34.0731.0494.4339reverse complement
CNT30102116Oryza punctataOryza rufipogon34.0785.6194.4339forward

Expression of CNT30604212

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MWVLPISNRRTATTNCTEEAKSCRFISRSALCF*

>peptide 2 (30 aa)
MNQIFVLQPKNRIQWVHQLSKPVQTWSLGG*

>peptide 3 (30 aa)
MITSVCTKERRSECAFFVEACLATPVISFC*

Sequence

>CNT30604212
GTTCTTGGGCATTGCCATTGGGGGCATTCTGATCTGCTGGCCTGATGATTACTAGTGTTTGCACTAAAGAACGGAGATCTGAATGTGCTTTCTTCGTTGA
AGCCTGCTTGGCCACTCCGGTGATCAGCTTCTGCTGATGCTGTACTACTACTACTACTACTACTCCAGTTGAAATTGCACTGGCTGCCTTTTTTGTCATG
CCGTGTGCTTGCTGAAATTTTGACAAATTGATCCTTTTTGATAACTTATTTTCCCCCTGTGCTCACCCTGATTCTTCCACCAAGTCGGCTGAGCAGGCTC
CGTGAAGCAGATTTGTAGATGCAAGAAATATGAAGGCTTGACTGGATGTGCCAGATTTAATATTGGAGATGTGGGTGCTTCCTATTTCTAATAGAAGGAC
AGCAACGACAAATTGCACAGAAGAAGCAAAGAGTTGCAGATTCATATCAAGAAGTGCTTTGTGTTTTTAAGATGTCACCGTACGGGTTTCTGCCTGCAAG
GACTAACGTTCGTTTGCAGTATTAGATATGTAATGAATGATGTAAATGTGTGGCTACCATTTTGAAATTGTTACTTAGCTTGAAGTGAACGAGTGTATCC
GTTACGCTCCAGAAGCAGAAACTCTGGCAATTTTTTTGGGAGAGCATAGGCCATAGGAATGGTGCTACAGTAAGCTTATTTGGACTTTAATTAGGCCCCA
CAAGAACAGGCTTAATGGGCTCATCATTTAAATTATGAAATAAGTTCATCTGAGGTCCCTTTGTTAATGAATCAGATTTTCGTCCTTCAACCGAAAAACC
GGATACAATGGGTCCATCAACTATCAAAACCAGTGCAAACATGGTCCCTAGGTGGTTAGGAAGATGGTTTTGGTTGACGTGGTAACTACGTGGCTAGTTT
GACTAGGTCTTCATCCTATGTGGTATTGACATGGTGATTATGTGACAATTTGATCCTGGAAAAATAATAAAAAACGTGGGCTAACATGTCAGCTG