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Detailed information on CNT30604206


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENW2|YCF3_SACOF, E-value = 6e-33

BLAST vs NONCODE:
NONOSAT000401, E-value = 1e-74

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696451Oryza punctataOryza sativa50.253.5996200forward
CNT30529029Oryza punctataEucalyptus grandis49.259.5787.76196forward
CNT30618959Oryza punctataSesamum indicum47.993.0389.01191forward
CNT3020650Oryza punctataCitrullus lanatus49.7511.3890.4198forward
CNT30730408Oryza punctataCorchorus capsularis48.9941.2388.72195forward
CNT30632355Oryza punctataVigna unguiculata48.9922.4787.18195forward
CNT30201080Oryza punctataPisum sativum48.999.7988.72195forward
CNT3047566Oryza punctataPrunus dulcis48.7410.0689.18194forward
CNT30194121Oryza punctataSecale cereale5022.2395.48199forward
CNT30224691Oryza punctataHordeum vulgare30.1543.9695120forward
CNT30390237Oryza punctataTriticum turgidum509.2193.97199forward
CNT30237795Oryza punctataBrassica oleracea49.55.1387.31197forward
CNT30510815Oryza punctataSolanum lycopersicum46.2338.5785.87184forward
CNT30556045Oryza punctataOryza glaberrima50.256.1396200forward
CNT30171250Oryza punctataTrifolium pratense25.3827.6792.08101forward
CNT30445979Oryza punctataSaccharum spontaneum46.7347.3395.7186forward
CNT3017916Oryza punctataZea mays509.6595.48199forward
CNT30232528Oryza punctataAnanas comosus49.59.9595.43197forward
CNT30217417Oryza punctataKalanchoe fedtschenkoi46.2339.3289.67184forward
CNT30655373Oryza punctataRosa chinensis48.994.6689.23195forward
CNT30627898Oryza punctataDaucus carota48.246.2489.58192forward
CNT30595954Oryza punctataOryza meridionalis50.2515.2396200forward
CNT30430934Oryza punctataPapaver somniferum48.742.9789.18194forward
CNT3057361Oryza punctataAmborella trichopoda48.743.8687.11194forward
CNT3022800Oryza punctataPopulus trichocarpa41.4648.5389.7165forward
CNT30332506Oryza punctataDioscorea rotundata48.7421.392.27194forward
CNT30149145Oryza punctataBrachypodium distachyon5011.0894.47199forward
CNT30103542Oryza punctataOryza rufipogon45.9825.8195.08183forward
CNT30114189Oryza punctataFicus carica48.994.9588.72195forward

Expression of CNT30604206

Peptides detected in this lncRNA

>peptide 1 (55 aa)
PGKSDIQHGSNNLIDMPCTFFFNCRNPGMRSSRIGSHNYHIIFKKKEFIEIFIFF*

Sequence

>CNT30604206
TCCGGGAAAAAGTGACATCCAGCACGGGTCCAATAATTTGATCGATATGCCCTGTACTTTTTTCTTCAATTGTAGAAACCCCGGGATGAGAAGTAGTAGA
ATTGGTTCTCATAATTATCACATAATTTTCAAAAAAAAGGAATTTATCGAAATTTTTATTTTTTTCTAGGGGTTTCGTTCTAGTGCCCGGAAATAATATT
CCAAAGCCTTTGTATGCTCTCCATTGCTTGTGTGTATAAGGCCCATGTTATAGAGTATATAACTTCGATCATAGGGATCAATTTATAATCGCGTAGCTTC
CTAATAATTCTGCAAAGCTTCCGTATAATTTCCTACGGATTGAACCAACATCCGTTACGGTCGTTCGAGGAGGGTGACCATAGCCATGGCCAAAACCG