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Detailed information on CNT30604168


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8S8T4|UXS4_ARATH, E-value = 5e-57

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3021247Oryza punctataCitrullus lanatus42.0312.682.76116forward
CNT30729539Oryza punctataCorchorus capsularis55.822.9281.82154forward
CNT30524728Oryza punctataPhaseolus vulgaris43.8422.4185.95121forward
CNT30486152Oryza punctataOlea europaea44.213.4883.61122forward
CNT30506399Oryza punctataNicotiana attenuata50.7242.381.43140forward
CNT30177095Oryza punctataSecale cereale65.2212.9993.89180forward
CNT30289293Oryza punctataTriticum aestivum77.970.7284.65215forward
CNT30223417Oryza punctataHordeum vulgare80.0797.3688.24221forward
CNT3084565Oryza punctataVigna radiata44.27.2283.61122forward
CNT30131528Oryza punctataLolium perenne98.1958.7995.2271forward
CNT30231964Oryza punctataAnanas comosus61.5913.9386.47170forward
CNT30477892Oryza punctataArabidopsis halleri55.814.3983.12154forward
CNT30570592Oryza punctataVitis vinifera80.0768.4283.26221forward
CNT30174824Oryza punctataVigna angularis98.5528.6381.62272forward
CNT30337932Oryza punctataCynara cardunculus84.4228.4183.26233forward
CNT3064271Oryza punctataSelaginella moellendorffii53.9927.0983.22149forward

Expression of CNT30604168

Peptides detected in this lncRNA

>peptide 1 (90 aa)
PVSLHLRMLEGITIDLTGAGEEEPGIDPLRQSEHVESPNHIGYDCLDGVVLVVDGGCGAGEVVDLVDLEEDWLDDVVADHLEVWVAEVVHN

>peptide 2 (34 aa)
MRGRRGGRSGRPRGGLARRRRGGSSRSLGCRSGAQ

Sequence

>CNT30604168
CCCCAGTAAGTCTCCACCTGAGGATGCTGGAGGGGATCACCATAGACCTCACTGGTGCTGGTGAGGAGGAACCTGGCATTGATCCTCTTCGCCAATCCGA
GCATGTTGAGAGTCCCAACCACATTGGATATGATTGTCTTGACGGGGTTGTACTTGTAGTGGACGGGGGATGCGGGGCAGGCGAGGTGGTAGATCTGGTC
GACCTCGAGGAGGATTGGCTCGACGACGTCGTGGCGGATCATCTCGAAGTTTGGGTTGCCGAAGTGGTGCACAACG