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Detailed information on CNT30604159


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693833Oryza punctataOryza sativa42.2635.5688.84224forward
CNT30553643Oryza punctataOryza glaberrima42.2634.6788.39224forward
CNT3067518Oryza punctataLeersia perrieri34.9134.8491.89185forward
CNT30596240Oryza punctataOryza meridionalis36.2336.2390.1192forward
CNT30370327Oryza punctataOryza glumipatula42.263588.84224forward
CNT30108575Oryza punctataOryza longistaminata42.2637.7788.84224forward
CNT30101831Oryza punctataOryza rufipogon42.2634.8988.84224forward
CNT30576567Oryza punctataOryza barthii42.2635.0588.39224forward
CNT30116760Oryza punctataOryza nivara42.2635.2288.39224forward

Expression of CNT30604159

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MDSNNKNLQPPPGYPTVDSEHGGGSPRRGRTTARGRKTRFIDGCIAALCCCWLCDLFCD*

Sequence

>CNT30604159
AGATCTTAGCCTTTCTCTTCATCTCAATTCAAAACAACATACAATTTGACAAAGAAAATTAACGCAGCTAGCTAATAGCTAGATCAAAGAAACCTCTCAT
TGATCTACTAGTGTGAGCTAGCTAGCTAGTACTAGTGTGTAGCATGGACAGCAACAACAAGAACCTGCAACCACCACCAGGCTACCCGACGGTGGATTCA
GAGCACGGCGGCGGCTCTCCACGCCGCGGACGAACGACAGCGCGCGGGAGAAAGACTAGATTCATAGATGGATGCATCGCCGCACTGTGCTGCTGCTGGC
TGTGTGACCTTTTCTGCGATTAAAGGAAGGGGCAAGCAGATAAATTAAGAGATGCCTTGATACATGTGTGCTGATAAGAGGAGTTTTGGTCAGTAAAGCA
GAGAATATATCGAAATGTTGTACCAGAAATTATATATGCATCCCGTGATTTCTTCATATATTTTTGATGGCGCGGAATAATGAATATGATATGCGTGAAT
TATCTACGTAATTCATTAATTACTTGTGTG