Detailed information on CNT30604150


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521912Oryza punctataSetaria italica31.9250.2990.75173forward
CNT30179302Oryza punctataSecale cereale25.4621.4390.58138reverse complement
CNT30301056Oryza punctataTriticum aestivum32.4713.2792.61176reverse complement
CNT30401480Oryza punctataTriticum turgidum52.9539.8191.29287forward
CNT30439866Oryza punctataAegilops tauschii29.8967.2290.74162reverse complement
CNT30667262Oryza punctataTriticum dicoccoides27.687592150forward
CNT3017917Oryza punctataZea mays33.034.3190.5179reverse complement
CNT30232563Oryza punctataAnanas comosus20.483.2490.09111reverse complement
CNT30689283Oryza punctataTriticum urartu32.476.9492.61176reverse complement
CNT30371086Oryza punctataOryza glumipatula30.2655.4198.17164forward
CNT30149997Oryza punctataBrachypodium distachyon32.4755.3590.34176reverse complement
CNT30577762Oryza punctataOryza barthii32.8457.2396.63178forward

Expression of CNT30604150

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MEVAIAKKEKRERESQMNRKIQFGSGRDHKSCKTILLIYRFYTI

>peptide 2 (33 aa)
MPNRRPMYKKRRKFLDLKKKVGILSIFIFHFSI*

>peptide 3 (45 aa)
MKLKILTKGQIQIKNNFAAHDRFLSRRKSPLNIYLVLYGFRYIEI*

Sequence

>CNT30604150
AAATGCTTTAAACAGAAAATAGCTAATGTAGAATTTATCTGATATAGAACACTCATATCGATAAAATGGTTTGAACTATTTACTAGAAGGGGCACCCTGC
CCTTTTTTATCCAATGCCGAATCGACGACCTATGTATAAAAAAAGGAGAAAGTTTTTGGATTTGAAGAAAAAAGTAGGAATTCTATCCATTTTCATTTTC
CATTTTTCTATTTAGTTTTTCTTAATGAAATTGAAAATTTTAACTAAAGGGCAAATACAAATAAAAAACAATTTTGCTGCCCATGATAGATTTTTATCTA
GGCGGAAGAGTCCTCTTAATATTTATCTAGTCTTATATGGGTTTCGGTATATTGAAATATAAACAGAAAAGAGAGGGTAGAGGATAGGCTCATTACATAA
AAAAAAATATGGAAGTAGCCATAGCAAAAAAAGAAAAAAGGGAGCGTGAGAGCCAAATGAATCGAAAGATTCAGTTTGGTTCGGGAAGAGATCATAAAAG
TTGTAAGACCATACTACTTATATATAGATTTTATACCATAAA