Detailed information on CNT30604128


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DG05|PSAH_ORYSJ, E-value = 4e-22

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693623Oryza punctataOryza sativa56.92293.33165forward
CNT30673389Oryza punctataSetaria viridis43.129.2192125forward
CNT30521234Oryza punctataSetaria italica32.411395.7494forward
CNT30178026Oryza punctataSecale cereale26.913.9891.0378forward
CNT30220389Oryza punctataHordeum vulgare22.4114.8787.6965forward
CNT3011150Oryza punctataZea mays28.629.8195.1883forward
CNT30720193Oryza punctataTriticum spelta23.4512.4588.2468forward
CNT30367799Oryza punctataSorghum bicolor52.4123.3586.18152forward
CNT30318832Oryza punctataAsparagus officinalis26.213.7288.1676forward
CNT30101676Oryza punctataOryza rufipogon57.2439.1592.77166forward
CNT30582309Oryza punctataEchinochloa crusgalli5032.4491.03145forward

Expression of CNT30604128

Peptides detected in this lncRNA

>peptide 1 (31 aa)
DPAMGTSSTVQRIAWMDQIKKKVRQRQKRGI*

Sequence

>CNT30604128
GATCCGGCCATGGGGACTAGCAGTACAGTACAGAGGATTGCATGGATGGATCAGATCAAGAAGAAGGTGAGGCAGAGGCAGAAACGAGGAATTTAATTTA
GATCTTGCCGCGTGGCCCGGGCGTCGGCGGCAGCTGCGGGCCCTTCTTGATCGGCAGCAGGTCCCACTGGCCGGTGGTGTTGCCGATGTCGTCGAGGTCG
AAGTAGACGCTCTTCTCGCCGTACTTTGCCACCACGGCGGCGCGCGGCCTGCAGTTCACACGCAAAGTTAATTAACCACTCACTTACTCC