Detailed information on CNT30604093


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001597, E-value = 2e-159

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696501Oryza punctataOryza sativa96.9668.2792.69383forward
CNT30555231Oryza punctataOryza glaberrima101.2714.3789.5400reverse complement
CNT30595624Oryza punctataOryza meridionalis76.9641.4290.79304reverse complement
CNT30109401Oryza punctataOryza longistaminata54.4326.0993.95215forward
CNT30100442Oryza punctataOryza rufipogon100.5111.7589.92397forward
CNT30575187Oryza punctataOryza barthii96.273.9392.63380forward

Expression of CNT30604093

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MRDTKARVQCTWKVKVPYGIRWRYCVRMGCGVEFGRSPNLVRLIM*

>peptide 2 (32 aa)
RFRFRVICLDIRDSFMNMTSRWILYVCNTVVC*

>peptide 3 (39 aa)
MHVEGEGSIWHTMEVLCAYGMRSRIWKESKFGAIDYVKFV

Sequence

>CNT30604093
GTCGGTTTCGGTTTCGGGTTATTTGTTTGGATATCCGTGATTCTTTCATGAATATGACTTCTAGATGGATACTATACGTATGTAATACTGTTGTTTGCTA
ACAATGAGTCAAGTTGGGGATAGCTTGGTCTCGGAATATGGTTTCTTTGTTTGTTCCATGTGTAGGTGAATTAATGCCGGGAGAGTATTTGCGGTGATTG
ACCGGGAGTCGGCTTGGGGATAAGACGACGTCCGTGGTGGTCAGAGATCATGCGGGATACTAAGGCTAGAGTTCAATGCACGTGGAAGGTGAAGGTTCCA
TATGGCATACGATGGAGGTATTGTGTGCGTATGGGATGCGGAGTCGAATTTGGAAGGAGTCCAAATTTGGTGCGATTGATTATGTAAAGTTTGTT