Detailed information on CNT30604085


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553765Oryza punctataOryza glaberrima58.3719.8891.09258reverse complement
CNT30596278Oryza punctataOryza meridionalis73.326.1388.58324reverse complement
CNT30105474Oryza punctataOryza longistaminata49.7730.0188.64220reverse complement
CNT30101649Oryza punctataOryza rufipogon58.3713.6191.09258reverse complement
CNT30576457Oryza punctataOryza barthii58.3712.8490.7258reverse complement

Expression of CNT30604085

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MAQVILYCSPKLLATSSVLQELHVIYRLQMKVRNSAETN*

>peptide 2 (33 aa)
VSLSHNRWPLQEFLVQFFNSKNCCRVLYNSLNA*

Sequence

>CNT30604085
TGTCTCACTCTCACATAACAGGTGGCCTCTCCAGGAATTTCTAGTTCAATTTTTCAACTCGAAAAACTGCTGCCGGGTTCTATATAATTCTCTCAATGCC
TGAAGTCTGAACTCTGAAGTTGCAAATTGTCCCAAGTTTGAATGTGGAAAGGCTGTTCCAGGTGATGTGCGTCACAGATTAAGAGGACATCATCAACTTC
CACACTTCGGTGGATTGATCGAAGCCAATAATAATGGATTCATGATTTAAAAATCGCTCAACGCTCATCCACAGCGCCTCGCTGCTCTTCCAACAAGAAG
TTCAGAACACAGTGTCCAACATGGCTCAGGTAATTCTTTACTGTTCGCCCAAATTGCTAGCTACCAGCAGCGTATTACAGGAGCTACATGTTATATACAG
ATTGCAGATGAAAGTAAGAAACTCTGCAGAAACAAACTGAAA