Detailed information on CNT30604057


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672771Oryza punctataSetaria viridis24.1229.0994.7996forward
CNT30179357Oryza punctataSecale cereale28.6411.7596.49114forward
CNT30386304Oryza punctataTriticum turgidum28.6421.1996.49114forward
CNT30553525Oryza punctataOryza glaberrima29.1516.3898.28116forward
CNT3017553Oryza punctataZea mays24.1237.2194.7996forward
CNT30349409Oryza punctataEragrostis tef28.649.5394.74114forward
CNT30596052Oryza punctataOryza meridionalis29.1521.2899.14116forward
CNT30101149Oryza punctataOryza rufipogon34.1724.9597.06136forward

Expression of CNT30604057

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MARFHASCKYRSNNLHAWEYILLLNGEAHRREREVEEDDEISGGVVPGGGPVGGAADAGHGVDLGEGVDLEGGATHDALA

>peptide 2 (51 aa)
VKQQTLSYSSFIVCTMTCHPRPRIYIAESPKLDKDFFFKKDEKLSKNTAEK*

>peptide 3 (41 aa)
MTRSAAASSQVAAQLVALPTRGMELILVKVSTLKVAPHMTPS

>peptide 4 (38 aa)
SEATNSFLFIIHSMYHDMPPATENIHCRKPKAGQGFFF*

Sequence

>CNT30604057
AAGTGAAGCAACAAACTCTTTCTTATTCATCATTCATAGTATGTACCATGACATGCCACCCGCGACCGAGAATATACATTGCCGAAAGCCCAAAGCTGGA
CAAGGATTTTTTTTTTAAAAAAGATGAAAAATTAAGTAAAAACACAGCAGAAAAATAGATGGCGCGCTTCCACGCTAGCTGCAAATATCGCTCTAACAAT
CTGCATGCTTGGGAATATATCCTGCTTCTGAACGGAGAAGCACATCGGAGAGAGAGAGAGGTAGAAGAAGATGACGAGATCAGCGGCGGCGTCGTCCCAG
GTGGCGGCCCAGTTGGTGGCGCTGCCGACGCGGGGCATGGAGTTGATCTTGGTGAAGGTGTCGACCTTGAAGGTGGCGCCACACATGACGCCCTCGCT