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Detailed information on CNT30604038


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG83|UBIQP_HORVU, E-value = 7e-91

BLAST vs NONCODE:
NONMTRT002043, E-value = 2e-51

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693219Oryza punctataOryza sativa19.7873.7593.53340forward
CNT30369993Oryza punctataOryza glumipatula19.7885.2192.35340forward
CNT30101348Oryza punctataOryza rufipogon42.1840.2886.48725forward
CNT30576255Oryza punctataOryza barthii42.1845.3188725forward
CNT30116557Oryza punctataOryza nivara19.7867.8692.35340forward

Expression of CNT30604038

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MSRCWSGGMPSLSWILAFTLSIVSDDSTSRVMVLPVRVFTNICMPPRRRSTRCKVDSFWML*

>peptide 2 (48 aa)
MVLPVRVLTNICIWKQRIGINIKLEKKKQLEHKLASDSTISILSAHNR*

>peptide 3 (53 aa)
SIDWYPCTVKQIVLAWIIIFVQNGFQLHRPYYGLAHMVHTNNLGTLNQKTTQP*

>peptide 4 (38 aa)
MTDERHRHNEFQRCITAHAQRPPRRRRTRCRVDSFWML*

Sequence

>CNT30604038
ATAGCATCGATTGGTACCCATGCACAGTTAAGCAAATTGTACTAGCATGGATTATAATATTTGTCCAGAACGGCTTCCAACTTCATAGGCCCTACTACGG
CCTTGCACACATGGTGCATACCAACAACTTAGGGACTCTAAACCAGAAAACAACTCAACCATGACACGACGATATGACAGACGAGCGGCATAGACATAAC
GAATTCCAACGCTGCATCACAGCACACGCTCAGAGACCACCACGGAGGCGCAGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTATAGTCAGCAAGGG
TGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATGAGCCGCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTATCGATCGT
GTCAGACGACTCGACCTCCAGGGTAATGGTCTTGCCGGTGAGGGTCTTCACGAATATTTGCATGCCTCCACGAAGGCGGAGTACAAGGTGCAAGGTGGAC
TCCTTCTGGATGTTATAATCCGCAAGAGTACGCCCATCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCT
GAATCTTAGCCTTCACATTGTCAATCGTATCGGAGGACTCAACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTAACAAATATCTGCATCTGGAAACA
AAGGATTGGAATCAACATAAAGTTAGAAAAAAAAAAGCAGCTGGAGCATAAGTTGGCATCAGATTCTACGATATCGATACTGTCAGCTCATAATAGATGA
ACATATCAATCACATCATAAAACACTACAATTGGAGAGCATTATTAATCATAAGAGAGCTGCTCACACCTCATCAACAAGCAACTACCAAATATCTTCAG
ATAACAAAACTGACATAAGCAACTACAGGACACGACAGATCTATGTAAGAATACAGAATAGAGCCACCTAGTTCTAGCATGCAACAGATTTGATTTGTAC
GAGTAAAGCAAATAAAACGGTAAAAAGCACTACAGTTCAACTAGGCAAAGAGCCAGATACGATACAGATTAAATTGACCGTAGAACCCAACCTCTACAGT
TCAAGTAGGTGCGCACGATAAAGATGTAATTCTCTAACCCAGCTCCACACAATTCCAGTCTAAGGGGAAAAAAACTAAGTGTCGCTAACTCAACAACCTG
AGGATTTTAACAGAACGAGCTATTCATCTATTGGAGCAATATCAAAACAATCCCATCTGAACTAAGCACAACTAGAAGTAAAACTAAATCTGATCACAAA
ACTCAACTATGTGGCAGGATCAAAACATAACTATGAACTACTCTTATTATCCATCATTATGGTAATATATTGAAACATTCCCATGAGTCAGAATAATCTC
AAAACCAATTCATCTATTAGATCGATCTAAATCACACAGATCCCTGCCTCGATTCTCACGAAACCCTAAATCGATTGAGAGATTAAGAGGATTACCCTAA
AATCGCACGAAACCGTAACTCGATTAAGAGGAGGATCACCGTAAAATCGCACGAAACCCTGAGATTGAGACTAACTCGCACGGGATCCTCTTACTTTTTC
CAACACGAGCATCAAAAACGCAAGATTAGACGGATTCGAGGATTAGAAGAAACTAGACGGTGATTAGTTACCTTGATGAGGCGATTAGAGAACGCAAGCT
TTGCTTCGCTTTCCCTTCG