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Detailed information on CNT30604019


BLAST search results

BLAST vs Swiss-Prot:
sp|O23755|EF2_BETVU, E-value = 5e-66

BLAST vs NONCODE:
NONGMAT000778, E-value = 4e-46

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674834Oryza punctataSetaria viridis36.0919.0392.62122forward
CNT30532843Oryza punctataEucalyptus grandis65.6830.3388.29222forward
CNT30316236Oryza punctataCorylus avellana73.6754.2584.34249forward
CNT30547574Oryza punctataIpomoea triloba42.3140.2887.41143forward
CNT30512729Oryza punctataJuglans regia77.8125.5684.41263forward
CNT30371838Oryza punctataArabidopsis thaliana74.8519.1883253forward
CNT30276060Oryza punctataChenopodium quinoa67.1635.886.78227forward
CNT30379936Oryza punctataManihot esculenta61.8362.5788.52209forward
CNT30405823Oryza punctataBeta vulgaris31.6623.7887.85107forward
CNT30488117Oryza punctataOlea europaea42.3129.384.62143forward
CNT30711584Oryza punctataGlycine max97.0446.5984.76328forward
CNT3045373Oryza punctataPrunus dulcis63.3127.385.51214forward
CNT30191304Oryza punctataSecale cereale90.2423.4492.46305forward
CNT30300473Oryza punctataTriticum aestivum91.1231.8291.56308forward
CNT30224354Oryza punctataHordeum vulgare90.2458.7791.48305forward
CNT30395070Oryza punctataTriticum turgidum90.2439.8791.15305forward
CNT30561656Oryza punctataActinidia chinensis83.1420.0784.7281forward
CNT30510505Oryza punctataSolanum lycopersicum77.8124.2287.83263forward
CNT30552635Oryza punctataOryza glaberrima97.3431.790.88329forward
CNT30440797Oryza punctataAegilops tauschii99.1146.0292.24335forward
CNT30313757Oryza punctataCamelina sativa77.2229.7684.29261forward
CNT3059659Oryza punctataArabidopsis lyrata64.7950.4682.19219forward
CNT30612508Oryza punctataArabis alpina76.0410.1382.88257forward
CNT30135610Oryza punctataLolium perenne55.6222.2291.49188forward
CNT3014085Oryza punctataZea mays97.6354.189.09330forward
CNT30605685Oryza punctataGossypium raimondii84.9137.5786.41287forward
CNT30683923Oryza punctataTriticum urartu90.2433.3391.8305forward
CNT30345702Oryza punctataEragrostis tef60.0625.1288.18203forward
CNT30596122Oryza punctataOryza meridionalis84.0241.0498.94284forward
CNT30359537Oryza punctataLactuca sativa36.9818.9786.4125forward
CNT30370118Oryza punctataOryza glumipatula71.639.1699.59242forward
CNT30107537Oryza punctataOryza longistaminata97.3435.890.58329forward
CNT30332479Oryza punctataDioscorea rotundata31.6637.8185.05107forward
CNT30149525Oryza punctataBrachypodium distachyon34.3238.4188.79116forward
CNT30100253Oryza punctataOryza rufipogon97.3429.8590.88329forward
CNT30575986Oryza punctataOryza barthii91.1226.0898.7308forward
CNT30497701Oryza punctataDigitaria exilis73.3776.3189.11248forward
CNT30116094Oryza punctataOryza nivara97.3437.3990.88329forward

Expression of CNT30604019

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MPRMFSSANAPSFDAHWNPATTESLISLRY*

Sequence

>CNT30604019
GTAAGCCTTGATGTTGTACAGCGGGGTACCAGGTAGACTGGCTCCAGCAGCCTTGGCTTCGCGGTGAGCTGAGAAGCATAGATGACCCTCCTTGCTGTCG
GAATGACCTGGCCACCGCCCCTGTGAATAGCATCAGCGTGGAGAACCACATCACATACCTCAAAGCAGATGCCGCGCATGTTCTCCTCAGCCAATGCACC
TTCTTTTGATGCCCACTGGAACCCAGCCACAACAGAGTCCTTGATTTCATTAAGATACTGAACTCCCTTACACATGTCGACCACCATGTTGGGGCCAGTG
GTCTCAGGTCCAAAGCACCAAATCTTCTTGGCGAGGTC