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Detailed information on CNT30604008


BLAST search results

BLAST vs Swiss-Prot:
sp|A8HPM5|PSBS2_CHLRE, E-value = 9e-17

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693167Oryza punctataOryza sativa72.2255.6397.17247forward
CNT30674846Oryza punctataSetaria viridis5033.489.47171forward
CNT30222634Oryza punctataHordeum vulgare26.929.1186.9692forward
CNT30456759Oryza punctataSaccharum spontaneum38.0127.7889.23130forward
CNT304942Oryza punctataZea mays33.0431.9291.15113forward
CNT30363915Oryza punctataSorghum bicolor29.5312.8388.12101forward
CNT30596071Oryza punctataOryza meridionalis41.2337.1197.16141forward
CNT30101341Oryza punctataOryza rufipogon59.6546.0597.55204forward
CNT30576149Oryza punctataOryza barthii71.645097.14245forward

Expression of CNT30604008

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MAAKKKKRMLKRRSGSISLMGTPVSMLSCARMPLPVTASPRRDAANPSMATLPTNSSFSLVNPMPP

>peptide 2 (85 aa)
MRGGSLVVVVVGEELAGSRVDGGEEEEEDVEEEERLDLVDGDARLDVELRQDALAGDRLAEEGRREPQHGDPADEQLVLLGEPDAA

Sequence

>CNT30604008
GGAGTACCAATTGACACTGTGTCATGATTTACTACTTATACATTGAGTAGCTAGTCAGTAGGTAATTAAATAATTAAACGAAAATGAGGGGTGGGTCATT
GGTCGTCGTCGTCGTCGGTGAGGAACTTGCCGGTTCCCGGGTTGATGGCGGCGAAGAAGAAGAAGAGGATGTTGAAGAGGAGGAGCGGCTCGATCTCGTT
GATGGGGACGCCCGTCTCGATGTTGAGCTGCGCCAGGATGCCCTTGCCGGTGACCGCCTCGCCGAGGAGGGACGCCGCGAACCCCAGCATGGCGACCCTG
CCGACGAACAGCTCGTTCTCCTTGGTGAACCCGATGCCGCCG