Detailed information on CNT30604007


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004101, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553440Oryza punctataOryza glaberrima76.0592.9684.651016forward
CNT30101501Oryza punctataOryza rufipogon79.1280.0885.531057forward
CNT30576146Oryza punctataOryza barthii77.174.885.731030forward
CNT30116641Oryza punctataOryza nivara18.4949.1183.81247forward

Expression of CNT30604007

Peptides detected in this lncRNA

>peptide 1 (94 aa)
MLTLYYYNQIVYLVLWCASHAHTQKETTICLYIYMNILNEFINNEFIILLLGFDNEEYAAACFVTCNSLPFHHTDLKDQHIIYLPACNIYYHRA*

>peptide 2 (30 aa)
MYLIMLLRKSFISHVQSWISPVKLHVIKDG*

>peptide 3 (39 aa)
MDLPFTISNFPVTIFQFSCVYFSPQILYDFSKMFLCLLL*

>peptide 4 (49 aa)
MKSYAILFVVITILIGSYYQHQYFFNSIYFLMWIITYNTFWQNTIFHKV*

>peptide 5 (57 aa)
RHCLHLLQPHLSNFPPRHGEPVTACSSLPPHAAITPLSFAPIFPSSFSFLDSSVLLW*

>peptide 6 (29 aa)
MAVLRLRSIHSKGVRFVAHAKRETSLVHD*

>peptide 7 (49 aa)
ATASTSCNRTFPIFLPDTASRSQPAPLFLRMQQSLLSHLPQFFLPLFLF*

>peptide 8 (87 aa)
PLPPPPATAPFQFSSPTRRAGHSLLLSSSACSNHSSLICPNFSFLFFFSRFFSVIMVIAWIVWCGSAGSGSVCIDASCGISGSHAVN*

Sequence

>CNT30604007
CGCCACTGCCTCCACCTCCTGCAACCGCACCTTTCCAATTTTCCTCCCCGACACGGCGAGCCGGTCACAGCCTGCTCCTCTCTTCCTCCGCATGCAGCAA
TCACTCCTCTCTCATTTGCCCCAATTTTTCCTTCCTCTTTTTCTTTTCTAGATTCTTCAGTGTTATTATGGTGATTGCTTGGATTGTGTGGTGCGGTAGT
GCAGGATCTGGATCTGTATGTATAGACGCGAGCTGCGGGATATCCGGATCGCATGCGGTAAATTGACTGAAAATCAGCGGAGTGAGGTATGTACCTAATA
ATGCTCTTGCGTAAATCGTTCATTTCGCATGTGCAGTCCTGGATCTCTCCTGTTAAGCTCCATGTTATCAAAGATGGTTGAATGGTGATCCATGGGATGA
TTATTATGACAAACTGTACTTCACAGTTCAACTAGACGATCCATGGGTTTCCTGAAAGTTTAGGTAAACACTATCTGAGGTGAGAAATGCCACTGCTTGT
TCTTTCTCCAATGCACTTTTGTGCAAAGTTAATCACCCCAAGAAAAGACCATTAAAGTGTTAACGATGAAATCATATGCAATATTATTCGTCGTTATCAC
TATTTTAATTGGATCATACTACCAACATCAATATTTTTTCAATTCCATTTATTTTCTAATGTGGATTATAACTTATAACACCTTTTGGCAAAACACTATC
TTTCATAAAGTCTAAGGACGCACGATGCTAACTCTATATTACTATAATCAGATTGTTTATCTAGTTCTATGGTGTGCTTCACACGCACACACACAGAAAG
AGACAACTATTTGTTTGTATATCTATATGAATATCTTGAATGAATTCATTAATAATGAATTTATCATTCTGTTATTAGGTTTTGATAATGAAGAGTATGC
TGCAGCTTGCTTTGTAACTTGCAATTCATTGCCATTCCACCACACGGACTTAAAAGATCAGCATATAATATATCTCCCTGCTTGTAACATATATTATCAT
AGGGCATGAACTGTAGTAAATCTATGCAGTTTCAAGCTGCTAGCTTACTACCAAACAGTACAAGTATATAACAAATAGTCATGGACTTACCATTCACTAT
TAGTAATTTTCCTGTTACCATATTTCAGTTTTCCTGTGTGTATTTTAGCCCCCAAATCCTATATGATTTTTCTAAAATGTTTTTATGCTTACTGCTGTGA
TGTATATAACATAAACAATGGCTGTTCTTAGGCTTCGTTCGATCCACTCCAAAGGAGTGAGATTTGTAGCGCACGCGAAACGAGAAACCTCATTAGTACA
TGATTAATTAAGTATTAACCATTATAAACTTGAAAC