Detailed information on CNT30603976


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30108407Oryza punctataOryza longistaminata10063.1298.43255forward
CNT30151494Oryza punctataBrachypodium distachyon99.2215.8691.7253forward
CNT30101481Oryza punctataOryza rufipogon10071.6398.82255forward
CNT30576227Oryza punctataOryza barthii10075.6798.82255forward
CNT30336357Oryza punctataCynara cardunculus39.2223.8785100forward

Expression of CNT30603976

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MCLAASQGEEIISCPFEAFSKASFAFSFSFLNL*

>peptide 2 (47 aa)
WHPLQEHQRQVVLFHIHDITLMLCDKNLKLHSSVQALSLKHQQIPCV*

Sequence

>CNT30603976
CTGGCACCCTTTGCAAGAGCATCAGAGGCAGGTTGTGCTCTTCCACATTCACGATATAACTCTGATGCTCTGCGATAAAAATCTGAAACTTCATTCCAGC
GTCCAAGCTCTTTCGCTAAAGCACCAGCAGATTCCATGTGTTTAGCAGCATCCCAGGGTGAAGAAATCATTTCTTGTCCTTTTGAAGCCTTCTCAAAGGC
ATCCTTTGCTTTCTCATTCTCCTTTTTGAACCTATAAGCAATAGCTTTAAAGTAG