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Detailed information on CNT30603960


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENF9|PSBJ_ORYNI, E-value = 2e-12

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30277508Oryza punctataChenopodium quinoa15.3522.8588.14194reverse complement
CNT30555951Oryza punctataOryza glaberrima5076.9899.21632reverse complement
CNT3060074Oryza punctataArabidopsis lyrata14.8733.187.23188reverse complement
CNT30679284Oryza punctataTriticum urartu24.2999.0394.79307forward
CNT30596720Oryza punctataOryza meridionalis12.1830.1495.45154forward
CNT30354577Oryza punctataLactuca sativa15.4321.9890.26195reverse complement
CNT30149874Oryza punctataBrachypodium distachyon36.5535.8493.29462reverse complement
CNT3099863Oryza punctataOryza rufipogon30.7896.2995.89389forward
CNT30724340Oryza punctataLupinus angustifolius26.9843.7288.27341reverse complement

Expression of CNT30603960

Peptides detected in this lncRNA

>peptide 1 (47 aa)
IESYQSILGFITHFCTCCFIFQLLLQLRERKRVVRILLSPFGKIPSL*

>peptide 2 (47 aa)
MWRKVGEMADTTGRIPLWLIGTVTGIAVIGLIGVFFYGSYSGLGSSL*

>peptide 3 (33 aa)
MKLIHFYEARRKKGSIEDPIFYSPEEVSCKSLI*

Sequence

>CNT30603960
GAATTGAATCGTACCAGTCTATACTGGGGTTTATTACTCATTTTTGTACTTGCTGTTTTATTTTCCAATTACTTCTTCAATTGAGAGAAAGAAAGAGAGT
AGTAAGAATTCTCTTATCCCCATTTGGAAAGATACCATCCTTATAACTATCCATGACTGTTTTTGTCTCTAGCATGACCACTTGATAAAATGTGGAGGAA
AGTAGGGGAAATGGCTGATACTACTGGAAGAATTCCTCTTTGGCTGATAGGTACTGTAACCGGTATTGCTGTGATTGGTTTAATAGGTGTTTTCTTTTAC
GGTTCATATTCTGGATTGGGTTCATCTCTATAGTAATTGGAGGGACCATATTGTAAACATGAAAAAATAGGAACTTAGCGGGTCCTTACCCCCCTTTATC
TGATTAGAGCGGAAAGGACCCGCGGAATTCTTACTCTTATAACCCGACTTTTTTAATCTATTCCATAACCTACAAACGGGTTTCCTATTTTGATTTGTAA
AAATAACAAAGAGAAAGCCTTTGCTCTGATGGTCAGAATCCCTCTATTTATTCGTTTTGTTTGTTAATTTTGTTTGTTAATAATGTTAGTGAAGTAATCC
ATCAGTTGATTTATAACCCCCTCGCCAATGAAATTGATTCACTTTTATGAAGCGAGGAGAAAGAAGGGATCAATCGAGGATCCAATATTTTATTCCCCGG
AGGAAGTCTCTTGTAAATCATTGATTTAATTTAGAGTAATAAACTAATAAAACTTTAATTAAAACTACACAACTAGCCTAAAAATAAAAAACAGCCTTCA
ATGGAAGAGTATCCGTTTTTTTTGCAAAATTTCTGTAAGTTCTAAATTGAACTTAATTGAACAAGTCAAGCAATTCTATTTGGTCACAAAAAATTTGTCC
CCCGCCATATTTTCTTTCCCTCTGTTTGTCCACTACATCGCCTGAACCTAAGCAAAAGAGGTTCAAGAGACAGACCCAAATAAAGAAGAAATAGTAATCT
TTGCCGAATAGGAAGAAAAAAGATTCTTATTTCGATACAAGAAGAATCGACACAAGAAAAAGGCTTTTTTGCCTTTTTCTTGTGCCCACTAGAGGATTAA
GAAGACGAGCAATCCCTCCTAAAAGGATTTGTTCCTTTTATTGTTCTCGCCCTTGCCTTGCATTCTCCTCATTTTGCATGAGATGATAGAAATAAGGAAT
TGCAGACAAGACATCTCGCAAACAAAAAGCGGCTTTTTACCAACTTGATGGTAAGAAATCCCGG