Detailed information on CNT30603956


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693126Oryza punctataOryza sativa35.9431.0192.95156forward
CNT30553363Oryza punctataOryza glaberrima92.457.4590.77401forward
CNT3067393Oryza punctataLeersia perrieri49.0840.2682.16213forward
CNT30596169Oryza punctataOryza meridionalis76.9698.8291.32334forward
CNT30116584Oryza punctataOryza nivara80.8878.3590.03351forward

Expression of CNT30603956

Peptides detected in this lncRNA

>peptide 1 (86 aa)
KIVLHRQVHLQHSGFEDKMKIFVFLFVGMIFICLCTCVLWNIESGRPPEDLQQKKTRNLLASTDRMDAPGDRIDHQCKRMNYPNCK*

>peptide 2 (45 aa)
QNCASSPSPSSTFRIRRQDENICVPICWYDFYLFMHLCVMEYRIR*

Sequence

>CNT30603956
CAAAATTGTGCTTCATCGCCAAGTCCATCTTCAACATTCAGGATTCGAAGACAAGATGAAAATATTTGTGTTCCTATTTGTTGGTATGATTTTTATCTGT
TTATGCACTTGTGTGTTATGGAATATAGAATCAGGTAGACCACCTGAGGATTTGCAGCAGAAGAAAACGAGGAATTTATTGGCCAGTACTGATAGAATGG
ATGCTCCTGGCGATAGAATTGATCATCAGTGCAAACGTATGAATTATCCAAATTGCAAGTGAATGAGCAATTGGTAAAGCAAACGAGGTACCGTAAAGAC
ATTAAATGTCAGTGTAAGAAATAAGACGTAATTAGCTAGACAGGTTTGCATTTGTAATATACAATTTCATACATAACTATAAAATTTAGTATTGTTCAAT
CATATTGAGAATTATACACTTATTGTGTTGTTTT