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Detailed information on CNT30603952


BLAST search results

BLAST vs Swiss-Prot:
sp|Q42430|ZFP1_WHEAT, E-value = 3e-54

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30445498Oryza punctataSaccharum spontaneum17.1631.2786.1187forward
CNT301541Oryza punctataZea mays9.7225.1290.57106forward
CNT3067190Oryza punctataLeersia perrieri38.7272.5186.26422forward
CNT30101096Oryza punctataOryza rufipogon51.2825.6793.56559forward

Expression of CNT30603952

Peptides detected in this lncRNA

>peptide 1 (29 aa)
RVFQFCKNMILKPICVYVTAYCTRINLPV*

>peptide 2 (83 aa)
MRRQSARFSSSDRWRRDLFRFAHPCGRCPPSSPLVALLLVTTSCWCSSSLSTAAWSASMDDALDMPPPQFTKAASGSTTCSLR*

>peptide 3 (30 aa)
MTVCMAMYHSLSLYKSRNKLNNSGTKRINE*

>peptide 4 (52 aa)
MCLCYSVLYTNQSPRMIEYGLQYMTAKEQSVKDTGTVPMLQRTKEELRPISV*

Sequence

>CNT30603952
CAGGGTGTTTCAGTTTTGTAAAAATATGATCTTGAAACCAATATGTGTTTATGTTACAGCGTACTGTACACGAATCAATCTCCCCGTATGATTGAATATG
GTCTACAATATATGACTGCCAAAGAACAAAGTGTAAAAGATACAGGTACAGTTCCAATGTTACAAAGAACCAAGGAAGAGCTAAGACCTATATCTGTATG
ACTGTATGTATGGCTATGTATCACTCGCTTTCTCTGTACAAAAGCAGGAACAAATTAAACAATAGCGGCACAAAACGAATCAATGAATAGTGTGTGTTTC
GACTGAATTTCACTCCCCTAGACCAAAAACGCTCTCACGGATCAGCCGATCAGATCCGTGCAGCTGCTGAATTACGCGGTGAGAAGGCGCGGCTTCTTGA
AGGCGAGGGGGCTCTGGACCTCCTCCTCGTCGTCCCACATCTTCTTGCCCTTGGAGCACGGCCGCCACACGAACTCCGGCACGGCCGGGAGGTTGAGGTC
GAACGCCCGGGCGGCGGAGTGGCCGTTGCCAGAGCTGCCCACCTCGGACTCGGCGGCCACCGTGGCAAGGAGCTCGGTTGAAGATGCGCCGGCGGCGGCG
CCTCCGTCGTAGTGCTTCCTCTTGTGCCCGCCGAGCGCCTGCCCGGAGCTGAAGGACTTGCCGCAGACGGAGCACTTGAACTCCGCACCTGCCGGCGGCG
GCGCCGAGAGCGGAGGCGGCGCCTGGACGCGGTGGTGGCCGCCGCGGGCGAGCATGAGGAGGCAGAGCGCGAGGTTCTCCTCCTCCGATCGCTGGCGGCG
CGACCTCTTCCGCTTCGCCCACCCCTGCGGCAGGTGCCCGCCCTCCTCCCCGCTCGTGGCGCTGCTGCTCGTCACGACCTCGTGCTGGTGCTCCTCCTCC
TTGAGCACAGCGGCGTGGAGCGCTTCCATGGACGACGCGCTCGACATGCCTCCACCGCAATTCACAAAAGCAGCAAGCGGATCGACGACTTGTTCTCTCC
GCTAGCTAAGCTTGCTCGCTCGCTCACGCTCTAGTGTGGCAGCTGGCTGGTTGCTGTGTGGTGTGGTGTGGTGTGCGGAGTGGAGGGAGT