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Detailed information on CNT30603900


BLAST search results

BLAST vs Swiss-Prot:
sp|Q852M2|ALDO3_ORYSJ, E-value = 9e-144

BLAST vs NONCODE:
NONORUT004017, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30344263Oryza punctataEragrostis tef21.920.9482.61161forward
CNT30100775Oryza punctataOryza rufipogon83.9588.493.19617forward

Expression of CNT30603900

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MPQSSQTFRRTGWSQTTCGTLRWFWDGTSHRR*

>peptide 2 (37 aa)
MAWEIDTTAPISTPLLLLLMAESSGICEMLMYLSWRS*

>peptide 3 (60 aa)
MEVLILVDSGAGVRCHNLHRPFVEQVGVKQPVELFDGSGTEPAIAGDRRRQSTTIFLTRG*

>peptide 4 (87 aa)
SKVMPSSEPQSGIETLISNVLESHGGCFKNSSRVTHILLAATWMVTVDPAARRTVAMSDGKDSLCAMMMLPPRVAVFRTNGEATLLR*

Sequence

>CNT30603900
CTCAAAGGTGATGCCATCATCTGAACCCCAGTCCGGGATAGAGACACTGATCAGCAATGTCCTGGAATCACATGGAGGCTGCTTCAAGAACTCCTCCAGA
GTGACGCACATCCTCTTGGCAGCCACCTGGATGGTGACAGTTGATCCTGCAGCGAGAAGAACGGTTGCGATGTCCGACGGGAAAGACAGCCTCTGCGCCA
TGATGATGTTGCCTCCTAGGGTCGCCGTGTTCCGGACGAACGGCGAGGCCACTTTGCTCAGGTGATCGGCGATCTTTCTGAACACTGCCCCTCCGTCTGA
CAGTATATCGATGGCTTGGGAGATAGACACGACTGCTCCGATCTCGACGCCCTTGCTGCTTTTGTTGATGGCTGAGAGTTCCGGAATCTGCGAGATGTTG
ATGTACTTGTCATGGAGGTCTTGATCCTTGTAGACTCCGGAGCCGGTGTTCGATGCCACAATCTTCACAGACCTTTCGTCGAACAGGTTGGAGTCAAACA
ACCTGTGGAACTCTTCGATGGTTCTGGGACGGAACCAGCCATCGCCGGTGACCGCCGCCGCCAGAGCACCACCATTTTCTTGACCCGTGGATGACCTTAT
CTCAGACTTGAGGAACTCCGGGAAGGTGCCGACGGCGGTGGAGTAGGGCGGCAGCTTGCTGACGTCAGCGCCTTTCTTCCAGAAGGCGTTGAGGCCGAGG
TCCTCAAGGTCAACGTCGGCGGCGAAGCTCTTGCA