CANTATAdb - search

Detailed information on CNT30603884

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FRG8|GRF9_ORYSJ, E-value = 1e-70

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30107681	Oryza punctata	Oryza longistaminata	6.78	43.89	88.66	97	forward
CNT30147738	Oryza punctata	Brachypodium distachyon	8.39	28.5	82.5	120	forward
CNT30579587	Oryza punctata	Echinochloa crusgalli	11.74	22.34	88.69	168	forward
CNT30116324	Oryza punctata	Oryza nivara	27.88	48.01	93.48	399	forward
CNT30593969	Oryza punctata	Eragrostis curvula	12.16	20.37	88.51	174	forward

Expression of CNT30603884

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MYVLFHKSGGRAFVAKLIGGNYVNCRGKSITTWLYWLYTSRRINLYAVLLLHFQ*

>peptide 2 (58 aa)
MRLRSPSLVDGTVRPCKPSTSPSSMAAAEKSANILEGQEGRGRRRGGGGGEHCWGQSQ*

>peptide 3 (39 aa)
MCLSQYLWSAMASFEHRHFLPSVRRHLPGSGSESAFGKP*

>peptide 4 (39 aa)
MFLLFCWLLLSQGFSMVFEEIDSQSPAGLNFSGLFGCFS*

Sequence

>CNT30603884
TGACATTGGAATCTTTGTTTTTCTGAAACTCCATTTTCTCATCCTTAGGCAAGCTGAAATTCTGAAGGACTGACTGAAGGCATCCACGATCATGCATCTT
GGTGAAAGGAATGTTTTTGTTGTTCTGCTGGTTGCTGCTCTCCCAAGGCTTCAGCATGGTATTTGAAGAGATCGATTCACAGTCTCCTGCTGGTCTGAAC
TTCTCCGGTTTGTTCGGTTGCTTCAGCTGAGAGAATAGGGACAGTGTAGGCTGTTGATTCTTCAAATTTAGCAATGGCTTTCTTGAACGGTGGCGGTTTC
TGTTGATGTGCCTCTCACAATACTTGTGGTCGGCCATGGCCTCCTTTGAACACCGCCATTTCTTGCCATCTGTTCGACGGCATCTTCCAGGTTCTGGGTC
AGAGTCTGCATTTGGGAAGCCTTGATAGAGAGGCCTCCAACTCACTGCAGTACAGTAAGTGAACAGAAAAAAACACTGTCCATCATGAGTTGCAGAGAAA
TACACAGATCATAAGGCCATACATACATGCATGCACCACTTTGCTTCTAAACTATAGTAACATGGAAATGTGTATGTGGTGATGAGCAAGGCCAGACCTG
ATGGCAATGTGTGAGCAGCCTTGGCGAATCTGAGCATCTTCTGTTCATCAAGAAACGGGGAAGGGTATGATGCAGCAGCAGCCTGGGTGAAGCTACCAGC
AGCAGCTCTCTTGATGAGGCTCAGATCACCCTCCTTGGTGGATGGCACTGTGAGGCCCTGCAAGCCCAGCACCTCCCCAAGCTCCATGGCAGCAGCAGAG
AAGTCAGCAAACATCTTGGAAGGACAGGAGGGGAGAGGAAGAAGAAGAGGAGGAGGGGGTGGTGAGCATTGCTGGGGACAGTCACAATGAGAGTGAAGTG
AGAGTGAGGAGAGTAGTGTGCTTTCTAGGAGGAGGCAGGAAGTGTGTGGTGATATATTATGGGATGGTGGCTCTTTGGGAGACTAGAGGTTTGAACACAA
GCCTCTCTATCAAAATGTGATTTAGAGCAATGTATGTACTGTTCCACAAAAGCGGAGGGAGGGCTTTTGTGGCCAAATTGATTGGGGGCAATTACGTGAA
CTGTAGGGGCAAATCAATAACTACATGGCTGTACTGGCTGTACACATCGCGCAGAATTAACCTCTATGCAGTACTACTACTACACTTCCAATAAGTGCAG
TTACACCCTTGTGTTTTCTTGCAAGTAAATATGCTCGAAATGAATGGTCGAGCTTCATGTGATGGTCAGAGGCTCTTCTCTCTTGCTCCCTCGCTGAAGG
AAATGTTTTAGTTTTATGTAGGAGTATTTATTTGTTTTTTTTTTTTTTTGAAGTCACACACTTCACTGCTTTGTTGATTCTGTTCCTCCTCTCCCCAGAG
AGAGTCCTCCAGACTTTTGCCATGTCCCAGG